BiodiversityR

Package for Community Ecology and Suitability Analysis

Graphical User Interface (via the R-Commander) and utility functions (often based on the vegan package) for statistical analysis of biodiversity and ecological communities, including species accumulation curves, diversity indices, Renyi profiles, GLMs for analysis of species abundance and presence-absence, distance matrices, Mantel tests, and cluster, constrained and unconstrained ordination analysis. A book on biodiversity and community ecology analysis is available for free download from the website. In 2012, methods for (ensemble) suitability modelling and mapping were expanded in the package.

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Description file content

Package
BiodiversityR
Type
Package
Title
Package for Community Ecology and Suitability Analysis
Version
2.10-1
Date
2018-07-14
Author
Roeland Kindt
Maintainer
Roeland Kindt
Description
Graphical User Interface (via the R-Commander) and utility functions (often based on the vegan package) for statistical analysis of biodiversity and ecological communities, including species accumulation curves, diversity indices, Renyi profiles, GLMs for analysis of species abundance and presence-absence, distance matrices, Mantel tests, and cluster, constrained and unconstrained ordination analysis. A book on biodiversity and community ecology analysis is available for free download from the website. In 2012, methods for (ensemble) suitability modelling and mapping were expanded in the package.
License
GPL-2
URL
Depends
R (>= 3.2.2), tcltk, vegan (>= 2.5-1)
Imports
Rcmdr (>= 2.4-4)
Suggests
permute, lattice, MASS, mgcv, cluster, car, RODBC, rpart, effects, multcomp, ellipse, maptree, sp, splancs, spatial, akima, nnet, dismo, raster (>= 2.0-31), rgdal, maxlike, gbm, randomForest, gam (>= 1.15), earth, mda, kernlab, e1071, glmnet, tools, methods, bootstrap, PresenceAbsence, geosphere, maptools, ENMeval, red, rgeos, igraph
Packaged
2018-07-14 17:36:01 UTC; RKINDT
NeedsCompilation
no
Repository
CRAN
Date/Publication
2018-07-14 18:00:02 UTC

install.packages('BiodiversityR')

2.10-1

3 months ago

http://www.worldagroforestry.org/output/tree-diversity-analysis

Roeland Kindt

GPL-2

Depends on

R (>= 3.2.2), tcltk, vegan (>= 2.5-1)

Imports

Rcmdr (>= 2.4-4)

Suggests

permute, lattice, MASS, mgcv, cluster, car, RODBC, rpart, effects, multcomp, ellipse, maptree, sp, splancs, spatial, akima, nnet, dismo, raster (>= 2.0-31), rgdal, maxlike, gbm, randomForest, gam (>= 1.15), earth, mda, kernlab, e1071, glmnet, tools, methods, bootstrap, PresenceAbsence, geosphere, maptools, ENMeval, red, rgeos, igraph

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