BlockFeST

Bayesian Calculation of Region-Specific Fixation Index to Detect Local Adaptation

An R implementation of an extension of the 'BayeScan' software (Foll, 2008) <DOI:10.1534/genetics.108.092221> for codominant markers, adding the option to group individual SNPs into pre-defined blocks. A typical application of this new approach is the identification of genomic regions, genes, or gene sets containing one or more SNPs that evolved under directional selection.

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Description file content

Package
BlockFeST
Type
Package
Title
Bayesian Calculation of Region-Specific Fixation Index to Detect Local Adaptation
Version
1.6
Date
2018-05-6
Author
Bastian Pfeifer
Maintainer
Bastian Pfeifer
Depends
R (>= 2.14.2), BASIX
Imports
methods
Suggests
PopGenome
Description
An R implementation of an extension of the 'BayeScan' software (Foll, 2008) for codominant markers, adding the option to group individual SNPs into pre-defined blocks. A typical application of this new approach is the identification of genomic regions, genes, or gene sets containing one or more SNPs that evolved under directional selection.
License
GPL-2
LazyLoad
yes
NeedsCompilation
yes
Packaged
2018-05-06 15:30:35 UTC; user
Repository
CRAN
Date/Publication
2018-05-07 09:12:22

install.packages('BlockFeST')

1.6

13 days ago

Bastian Pfeifer

GPL-2

Depends on

R (>= 2.14.2), BASIX

Imports

methods

Suggests

PopGenome

Discussions