DDD

Diversity-Dependent Diversification

Implements maximum likelihood and bootstrap methods based on the diversity-dependent birth-death process to test whether speciation or extinction are diversity-dependent, under various models including various types of key innovations. See Etienne et al. 2012, Proc. Roy. Soc. B 279: 1300-1309, <DOI:10.1098/rspb.2011.1439>, Etienne & Haegeman 2012, Am. Nat. 180: E75-E89, <DOI:10.1086/667574> and Etienne et al. 2016. Meth. Ecol. Evol. 7: 1092-1099, <DOI:10.1111/2041-210X.12565>. Also contains functions to simulate the diversity-dependent process.

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Description file content

Package
DDD
Type
Package
Title
Diversity-Dependent Diversification
Version
3.9
Date
2019-03-19
Depends
R (>= 3.5.0)
Imports
deSolve, ape, phytools, subplex, Matrix, expm, SparseM
Suggests
testthat
Author
Rampal S. Etienne & Bart Haegeman
Maintainer
Rampal S. Etienne
License
GPL-3
Encoding
UTF-8
Description
Implements maximum likelihood and bootstrap methods based on the diversity-dependent birth-death process to test whether speciation or extinction are diversity-dependent, under various models including various types of key innovations. See Etienne et al. 2012, Proc. Roy. Soc. B 279: 1300-1309, , Etienne & Haegeman 2012, Am. Nat. 180: E75-E89, and Etienne et al. 2016. Meth. Ecol. Evol. 7: 1092-1099, . Also contains functions to simulate the diversity-dependent process.
RoxygenNote
6.1.1
NeedsCompilation
yes
Packaged
2019-03-19 08:43:07 UTC; rampa
Repository
CRAN
Date/Publication
2019-03-19 13:03:26 UTC

install.packages('DDD')

3.9

4 days ago

Rampal S. Etienne

GPL-3

Depends on

R (>= 3.5.0)

Imports

deSolve, ape, phytools, subplex, Matrix, expm, SparseM

Suggests

testthat

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