EpiEstim

Estimate Time Varying Reproduction Numbers from Epidemic Curves

Tools to quantify transmissibility throughout an epidemic from the analysis of time series of incidence as described in Cori et al. (2013) <doi:10.1093/aje/kwt133> and Wallinga and Teunis (2004) <doi:10.1093/aje/kwh255>.

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Description file content

Package
EpiEstim
Version
2.2-1
Title
Estimate Time Varying Reproduction Numbers from Epidemic Curves
Maintainer
Anne Cori
Description
Tools to quantify transmissibility throughout an epidemic from the analysis of time series of incidence as described in Cori et al. (2013) and Wallinga and Teunis (2004) .
Depends
R (>= 2.10)
Imports
coarseDataTools (>= 0.6-4), stats, graphics, reshape2, ggplot2, gridExtra, fitdistrplus, coda, incidence (>= 1.7.0), scales, grDevices
Suggests
testthat, utils, vdiffr, covr, knitr, rmarkdown
License
GPL (>= 2)
LazyLoad
yes
RoxygenNote
6.1.1
VignetteBuilder
knitr
NeedsCompilation
no
Packaged
2019-07-08 10:03:43 UTC; acori
Author
Anne Cori [aut, cre] (), Simon Cauchemez [ctb], Neil M. Ferguson [ctb] (), Christophe Fraser [ctb] (), Elisabeth Dahlqwist [ctb] (), P. Alex Demarsh [ctb], Thibaut Jombart [ctb] (), Zhian N. Kamvar [ctb] (), Justin Lessler [ctb] (), Shikun Li [ctb], Jonathan A. Polonsky [ctb] (), Jake Stockwin [ctb], Robin Thompson [ctb] (), Rolina van Gaalen [ctb]
Repository
CRAN
Date/Publication
2019-07-08 16:40:07 UTC

install.packages('EpiEstim')

2.2-1

9 days ago

Anne Cori

GPL (>= 2)

Depends on

R (>= 2.10)

Imports

coarseDataTools (>= 0.6-4), stats, graphics, reshape2, ggplot2, gridExtra, fitdistrplus, coda, incidence (>= 1.7.0), scales, grDevices

Suggests

testthat, utils, vdiffr, covr, knitr, rmarkdown

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