EstMix

Tumor Clones Percentage Estimations

Includes R functions for the estimation of tumor clones percentages for both snp data and (whole) genome sequencing data. See Cheng, Y., Dai, J. Y., Paulson, T. G., Wang, X., Li, X., Reid, B. J., & Kooperberg, C. (2017). Quantification of multiple tumor clones using gene array and sequencing data. The Annals of Applied Statistics, 11(2), 967-991, <doi:10.1214/17-AOAS1026> for more details.

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Description file content

Package
EstMix
Type
Package
Title
Tumor Clones Percentage Estimations
Version
1.0.1
Author
Xuan You , Yichen Cheng
Maintainer
Xuan You
Description
Includes R functions for the estimation of tumor clones percentages for both snp data and (whole) genome sequencing data. See Cheng, Y., Dai, J. Y., Paulson, T. G., Wang, X., Li, X., Reid, B. J., & Kooperberg, C. (2017). Quantification of multiple tumor clones using gene array and sequencing data. The Annals of Applied Statistics, 11(2), 967-991, for more details.
License
GPL (>= 2)
Encoding
UTF-8
LazyLoad
yes
LazyData
yes
Imports
Rcpp (>= 0.12.12), PSCBS
LinkingTo
Rcpp, RcppArmadillo
RoxygenNote
6.0.1
NeedsCompilation
yes
Packaged
2018-09-13 00:31:16 UTC; xuan
Repository
CRAN
Date/Publication
2018-09-13 04:20:02 UTC

install.packages('EstMix')

1.0.1

9 days ago

Xuan You

GPL (>= 2)

Imports

Rcpp (>= 0.12.12), PSCBS

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