FourgameteP

FourGamete Test

The four-gamete test is based on the infinite-sites model which assumes that the probability of the same mutation occurring twice (recurrent or parallel mutations) and the probability of a mutation back to the original state (reverse mutations) are close to zero. Without these types of mutations, the only explanation for observing the four dilocus genotypes (example below) is recombination (Hudson and Kaplan 1985, Genetics 111:147-164). Thus, the presence of all four gametes is also called phylogenetic incompatibility.

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Description file content

Package
FourgameteP
Type
Package
Title
FourGamete Test
Version
0.1.0
Author
Milton T Drott
Maintainer
Milton T Drott
Description
The four-gamete test is based on the infinite-sites model which assumes that the probability of the same mutation occurring twice (recurrent or parallel mutations) and the probability of a mutation back to the original state (reverse mutations) are close to zero. Without these types of mutations, the only explanation for observing the four dilocus genotypes (example below) is recombination (Hudson and Kaplan 1985, Genetics 111:147-164). Thus, the presence of all four gametes is also called phylogenetic incompatibility.
License
GPL-2
Encoding
UTF-8
LazyData
true
RoxygenNote
6.1.0
NeedsCompilation
no
Packaged
2018-09-30 18:55:13 UTC; mtd
Repository
CRAN
Date/Publication
2018-10-08 10:50:03 UTC

install.packages('FourgameteP')

0.1.0

11 days ago

Milton T Drott

GPL-2

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