HTSSIP

High Throughput Sequencing of Stable Isotope Probing Data Analysis

Functions for analyzing high throughput sequencing stable isotope probing (HTS-SIP) data. Analyses include high resolution stable isotope probing (HR-SIP), multi-window high resolution stable isotope probing (MW-HR-SIP), and quantitative stable isotope probing (q-SIP).

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Description file content

Package
HTSSIP
Type
Package
Title
High Throughput Sequencing of Stable Isotope Probing Data Analysis
Version
1.4.0
Maintainer
Samuel Barnett
Description
Functions for analyzing high throughput sequencing stable isotope probing (HTS-SIP) data. Analyses include high resolution stable isotope probing (HR-SIP), multi-window high resolution stable isotope probing (MW-HR-SIP), and quantitative stable isotope probing (q-SIP).
License
GPL-2 | file LICENSE
LazyData
TRUE
Depends
R (>= 3.4.0)
Imports
igraph(>= 1.1.2), ape(>= 4.1), magrittr (>= 1.5), stringr (>= 1.2.0), plyr (>= 1.8.4), dplyr (>= 0.7.4), tidyr (>= 0.7.2), ggplot2 (>= 2.2.1), vegan (>= 2.4.0), DESeq2 (>= 1.16.1), phyloseq (>= 1.20.0), coenocliner (>= 0.2.2), lazyeval(>= 0.2.0)
RoxygenNote
6.0.1
Suggests
testthat, knitr, rmarkdown, doParallel
VignetteBuilder
knitr
NeedsCompilation
no
Packaged
2018-05-14 21:44:22 UTC; sam
Author
Nicholas Youngblut [aut], Samuel Barnett [cre, ctb]
Repository
CRAN
Date/Publication
2018-05-15 07:23:00 UTC

install.packages('HTSSIP')

1.4.0

6 months ago

Samuel Barnett

GPL-2 | file LICENSE

Depends on

R (>= 3.4.0)

Imports

igraph(>= 1.1.2), ape(>= 4.1), magrittr (>= 1.5), stringr (>= 1.2.0), plyr (>= 1.8.4), dplyr (>= 0.7.4), tidyr (>= 0.7.2), ggplot2 (>= 2.2.1), vegan (>= 2.4.0), DESeq2 (>= 1.16.1), phyloseq (>= 1.20.0), coenocliner (>= 0.2.2), lazyeval(>= 0.2.0)

Suggests

testthat, knitr, rmarkdown, doParallel

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