ISOpureR

Deconvolution of Tumour Profiles

Deconvolution of mixed tumour profiles into normal and cancer for each patient, using the ISOpure algorithm in Quon et al. Genome Medicine, 2013 5:29. Deconvolution requires mixed tumour profiles and a set of unmatched "basis" normal profiles.

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Description file content

Package
ISOpureR
Version
1.1.2
Date
2018-05-01
Title
Deconvolution of Tumour Profiles
Author
Gerald Quon [aut], Catalina V Anghel [aut, trl], Syed Haider [aut], Francis Nguyen [aut], Amit G Deshwar [aut], Quaid D Morris [aut], Paul C Boutros [aut, cre]
Maintainer
Paul C Boutros
Depends
R (>= 3.1.1)
Imports
Rcpp (>= 0.11.3), stats, futile.logger
LinkingTo
Rcpp, RcppEigen (>= 0.3.2.2.0)
Suggests
knitr
VignetteBuilder
knitr
Description
Deconvolution of mixed tumour profiles into normal and cancer for each patient, using the ISOpure algorithm in Quon et al. Genome Medicine, 2013 5:29. Deconvolution requires mixed tumour profiles and a set of unmatched "basis" normal profiles.
License
GPL-2
NeedsCompilation
yes
Packaged
2018-05-01 15:45:09 UTC; clalansingh
Repository
CRAN
Date/Publication
2018-05-01 20:21:42 UTC

install.packages('ISOpureR')

1.1.2

4 months ago

Paul C Boutros

GPL-2

Depends on

R (>= 3.1.1)

Imports

Rcpp (>= 0.11.3), stats, futile.logger

Suggests

knitr

Discussions