LDheatmap

Graphical Display of Pairwise Linkage Disequilibria Between SNPs

Produces a graphical display, as a heat map, of measures of pairwise linkage disequilibria between SNPs. Users may optionally include the physical locations or genetic map distances of each SNP on the plot.

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Description file content

Package
LDheatmap
Version
0.99-4
Date
2018-03-11
Title
Graphical Display of Pairwise Linkage Disequilibria Between SNPs
Author
Ji-Hyung Shin , Sigal Blay , Nicholas Lewin-Koh , Brad McNeney , Jinko Graham
Maintainer
Brad McNeney
Depends
R (>= 2.14.0)
Imports
grid, genetics, snpStats
Suggests
rtracklayer, GenomicRanges, GenomeInfoDb, IRanges, lattice, ggplot2
Description
Produces a graphical display, as a heat map, of measures of pairwise linkage disequilibria between SNPs. Users may optionally include the physical locations or genetic map distances of each SNP on the plot.
License
GPL-3
URL
Repository
CRAN
Date/Publication
2018-03-12 19:13:24 UTC
NeedsCompilation
no
Packaged
2018-03-12 18:53:25 UTC; mcneney

install.packages('LDheatmap')

0.99-4

3 months ago

http://stat.sfu.ca/statgen/research/ldheatmap.html

Brad McNeney

GPL-3

Depends on

R (>= 2.14.0)

Imports

grid, genetics, snpStats

Suggests

rtracklayer, GenomicRanges, GenomeInfoDb, IRanges, lattice, ggplot2

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