LDheatmap

Graphical Display of Pairwise Linkage Disequilibria Between SNPs

Produces a graphical display, as a heat map, of measures of pairwise linkage disequilibria between SNPs. Users may optionally include the physical locations or genetic map distances of each SNP on the plot.

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Description file content

Package
LDheatmap
Version
0.99-5
Date
2018-08-11
Title
Graphical Display of Pairwise Linkage Disequilibria Between SNPs
Maintainer
Brad McNeney
Depends
R (>= 2.14.0)
Imports
grid, genetics, snpStats
Suggests
rtracklayer, GenomicRanges, GenomeInfoDb, IRanges, lattice, ggplot2
Description
Produces a graphical display, as a heat map, of measures of pairwise linkage disequilibria between SNPs. Users may optionally include the physical locations or genetic map distances of each SNP on the plot.
License
GPL-3
URL
Repository
CRAN
Date/Publication
2018-08-16 19:00:03 UTC
RoxygenNote
6.0.1
NeedsCompilation
no
Packaged
2018-08-16 06:34:40 UTC; mcneney
Author
Ji-Hyung Shin [aut], Sigal Blay [aut], Nicholas Lewin-Koh [ctb], Brad McNeney [aut, cre], Gloria Yang [ctb], Matthew Reyers [ctb], Jinko Graham [aut]

install.packages('LDheatmap')

0.99-5

a month ago

http://stat.sfu.ca/statgen/research/ldheatmap.html

Brad McNeney

GPL-3

Depends on

R (>= 2.14.0)

Imports

grid, genetics, snpStats

Suggests

rtracklayer, GenomicRanges, GenomeInfoDb, IRanges, lattice, ggplot2

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