LPmerge

Merging Linkage Maps by Linear Programming

Creates a consensus genetic map by merging linkage maps from different populations. The software uses linear programming (LP) to efficiently minimize the mean absolute error between the consensus map and the linkage maps. This minimization is performed subject to linear inequality constraints that ensure the ordering of the markers in the linkage maps is preserved. When marker order is inconsistent between linkage maps, a minimum set of ordinal constraints is deleted to resolve the conflicts.

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Description file content

Package
LPmerge
Title
Merging Linkage Maps by Linear Programming
Version
1.7
Author
Jeffrey Endelman
Maintainer
Jeffrey Endelman
Description
Creates a consensus genetic map by merging linkage maps from different populations. The software uses linear programming (LP) to efficiently minimize the mean absolute error between the consensus map and the linkage maps. This minimization is performed subject to linear inequality constraints that ensure the ordering of the markers in the linkage maps is preserved. When marker order is inconsistent between linkage maps, a minimum set of ordinal constraints is deleted to resolve the conflicts.
Depends
Rglpk, Matrix
License
GPL-3
URL
NeedsCompilation
no
Packaged
2018-06-07 15:24:25 UTC; endelman
Repository
CRAN
Date/Publication
2018-06-07 17:43:50 UTC

install.packages('LPmerge')

1.7

6 months ago

http://potatobreeding.cals.wisc.edu/software

Jeffrey Endelman

GPL-3

Depends on

Rglpk, Matrix

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