MDSMap

High Density Genetic Linkage Mapping using Multidimensional Scaling

Estimate genetic linkage maps for markers on a single chromosome (or in a single linkage group) from pairwise recombination fractions or intermarker distances using weighted metric multidimensional scaling. The methods are suitable for autotetraploid as well as diploid populations. Options for assessing the fit to a known map are also provided. Methods are discussed in detail in Preedy and Hackett (2016) <doi:10.1007/s00122-016-2761-8>.

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Description file content

Package
MDSMap
Type
Package
Title
High Density Genetic Linkage Mapping using Multidimensional Scaling
Version
1.1
Date
2018-08-07
Author
Katharine F. Preedy , Christine A. Hackett
Maintainer
Bram Boskamp
Description
Estimate genetic linkage maps for markers on a single chromosome (or in a single linkage group) from pairwise recombination fractions or intermarker distances using weighted metric multidimensional scaling. The methods are suitable for autotetraploid as well as diploid populations. Options for assessing the fit to a known map are also provided. Methods are discussed in detail in Preedy and Hackett (2016) .
License
GPL-3 | file LICENSE
Depends
R (>= 3.2.0)
Imports
smacof (>= 1.9.0), princurve (>= 2.1.2), rgl, reshape
RoxygenNote
6.1.0
Suggests
qtl, R.rsp
VignetteBuilder
R.rsp
NeedsCompilation
no
Packaged
2018-08-07 14:12:12 UTC; Bram Boskamp
Repository
CRAN
Date/Publication
2018-08-09 10:10:08 UTC

install.packages('MDSMap')

1.1

6 days ago

Bram Boskamp

GPL-3 | file LICENSE

Depends on

R (>= 3.2.0)

Imports

smacof (>= 1.9.0), princurve (>= 2.1.2), rgl, reshape

Suggests

qtl, R.rsp

Discussions