ML.MSBD

Maximum Likelihood Inference on Multi-State Trees

Inference of a multi-states birth-death model from a phylogeny, comprising a number of states N, birth and death rates for each state and on which edges each state appears. Inference is done using a hybrid approach: states are progressively added in a greedy approach. For a fixed number of states N the best model is selected via maximum likelihood. Reference: J. Barido-Sottani and T. Stadler (2017) <doi:10.1101/215491>.

Total

3,029

Last month

339

Last week

101

Average per day

11

Daily downloads

Total downloads

Description file content

Package
ML.MSBD
Type
Package
Title
Maximum Likelihood Inference on Multi-State Trees
Version
1.1.1
Date
2019-03-07
Description
Inference of a multi-states birth-death model from a phylogeny, comprising a number of states N, birth and death rates for each state and on which edges each state appears. Inference is done using a hybrid approach: states are progressively added in a greedy approach. For a fixed number of states N the best model is selected via maximum likelihood. Reference: J. Barido-Sottani and T. Stadler (2017) .
License
GPL-3
Imports
ape (>= 4.1)
Suggests
knitr
RoxygenNote
6.1.1
VignetteBuilder
knitr
NeedsCompilation
no
Packaged
2019-03-07 15:27:38 UTC; joellebs
Author
Joelle Barido-Sottani [aut, cre]
Maintainer
Joelle Barido-Sottani
Repository
CRAN
Date/Publication
2019-03-07 15:42:43 UTC

install.packages('ML.MSBD')

1.1.1

14 days ago

Joelle Barido-Sottani

GPL-3

Imports

ape (>= 4.1)

Suggests

knitr

Discussions