MetaLonDA

Metagenomics Longitudinal Differential Abundance Method

Identify time intervals of differentially abundant metagenomic features in longitudinal studies (Metwally AA, et al., Microbiome, 2018 <doi:10.1186/s40168-018-0402-y>).

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Description file content

Package
MetaLonDA
Type
Package
Title
Metagenomics Longitudinal Differential Abundance Method
Version
1.1.5
Date
2019-04-12
Author
Ahmed A. Metwally, Yang Dai, Patricia W. Finn, David L. Perkins
Maintainer
Ahmed A. Metwally
URL
BugReports
https://github.com/aametwally/MetaLonDA/issues
Description
Identify time intervals of differentially abundant metagenomic features in longitudinal studies (Metwally AA, et al., Microbiome, 2018 ).
License
MIT + file LICENSE
Depends
R(>= 3.2.0)
Imports
gss, plyr, zoo, pracma, ggplot2, parallel, doParallel, metagenomeSeq, DESeq2, edgeR
Suggests
knitr, rmarkdown
biocViews
Repository
CRAN
NeedsCompilation
no
Encoding
UTF-8
LazyData
true
RoxygenNote
6.1.1
VignetteBuilder
knitr
Packaged
2019-04-13 09:02:39 UTC; ahmedmetwally
Date/Publication
2019-04-13 22:43:03 UTC

install.packages('MetaLonDA')

1.1.5

3 months ago

https://github.com/aametwally/MetaLonDA

Ahmed A. Metwally

MIT + file LICENSE

Depends on

R(>= 3.2.0)

Imports

gss, plyr, zoo, pracma, ggplot2, parallel, doParallel, metagenomeSeq, DESeq2, edgeR

Suggests

knitr, rmarkdown

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