MetamapsDB

Network Analysis of Metabolic Pathways and Gene Based Assemblies in Metagenomics

Functions for path based queries against 'Omics' <https://github.com/etheleon/omics-neo4j-container>, a 'NEO4J' <https://neo4j.com/> database populated with data from metagenomic surveys and their accompanying metabolic and taxonomic annotations.

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Description file content

Package
MetamapsDB
Title
Network Analysis of Metabolic Pathways and Gene Based Assemblies in Metagenomics
Maintainer
Wesley GOI
Author
Wesley GOI
Version
0.0.2
License
GPL (>= 2)
Depends
R (>= 3.1.1)
Description
Functions for path based queries against 'Omics' , a 'NEO4J' database populated with data from metagenomic surveys and their accompanying metabolic and taxonomic annotations.
Imports
IRanges, ShortRead, future, GenomicRanges, forcats, ggplot2, purrr, gridExtra, lubridate, zoo, magrittr, stats, utils, grDevices, parallel, RJSONIO, RCurl, igraph, rgexf, dplyr (>= 0.3.0.1), Matrix (>= 1.2-12), stringr, tidyr, shiny, base64enc, cluster, DBI, RSQLite, data.table, httr,
LazyData
TRUE
RoxygenNote
6.0.1
NeedsCompilation
no
Packaged
2017-12-05 09:40:49 UTC; uesu
Repository
CRAN
Date/Publication
2017-12-06 09:51:00 UTC

install.packages('MetamapsDB')

0.0.2

7 days ago

Wesley GOI

GPL (>= 2)

Depends on

R (>= 3.1.1)

Imports

IRanges, ShortRead, future, GenomicRanges, forcats, ggplot2, purrr, gridExtra, lubridate, zoo, magrittr, stats, utils, grDevices, parallel, RJSONIO, RCurl, igraph, rgexf, dplyr (>= 0.3.0.1), Matrix (>= 1.2-12), stringr, tidyr, shiny, base64enc, cluster, DBI, RSQLite, data.table, httr,

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