MixSIAR

Bayesian Mixing Models in R

Creates and runs Bayesian mixing models to analyze biological tracer data (i.e. stable isotopes, fatty acids), which estimate the proportions of source (prey) contributions to a mixture (consumer). 'MixSIAR' is not one model, but a framework that allows a user to create a mixing model based on their data structure and research questions, via options for fixed/ random effects, source data types, priors, and error terms. 'MixSIAR' incorporates several years of advances since 'MixSIR' and 'SIAR', and includes both GUI (graphical user interface) and script versions.

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Description file content

Package
MixSIAR
Title
Bayesian Mixing Models in R
Version
3.1.10
Description
Creates and runs Bayesian mixing models to analyze biological tracer data (i.e. stable isotopes, fatty acids), which estimate the proportions of source (prey) contributions to a mixture (consumer). 'MixSIAR' is not one model, but a framework that allows a user to create a mixing model based on their data structure and research questions, via options for fixed/ random effects, source data types, priors, and error terms. 'MixSIAR' incorporates several years of advances since 'MixSIR' and 'SIAR', and includes both GUI (graphical user interface) and script versions.
Depends
R (>= 3.4.0)
Imports
ggplot2 (>= 2.2.1), rjags (>= 4-6), R2jags (>= 0.5-7), MASS (>= 7.3), RColorBrewer (>= 1.1), reshape (>= 0.8.7), reshape2 (>= 1.4.3), lattice (>= 0.20-35), MCMCpack (>= 1.4-2), ggmcmc (>= 1.1), coda (>= 0.19-1), loo (>= 2.0.0), bayesplot (>= 1.4.0)
Suggests
gWidgets (>= 0.0-54), gWidgetsRGtk2 (>= 0.0-86), splancs (>= 2.01-40), knitr, rmarkdown, testthat
SystemRequirements
JAGS (>= 4.1) for the script version, both JAGS and GTK+ for the GUI version. For install instructions, see README file.
URL
BugReports
https://github.com/brianstock/MixSIAR/issues
License
GPL-3
LazyData
true
VignetteBuilder
knitr
RoxygenNote
6.0.1
NeedsCompilation
no
Packaged
2018-04-13 01:47:20 UTC; brian
Author
Brian Stock [cre, aut], Brice Semmens [aut], Eric Ward [ctb], Andrew Parnell [ctb], Andrew Jackson [ctb], Donald Phillips [ctb]
Maintainer
Brian Stock
Repository
CRAN
Date/Publication
2018-04-13 03:09:50 UTC

install.packages('MixSIAR')

3.1.10

7 months ago

https://github.com/brianstock/MixSIAR

Brian Stock

GPL-3

Depends on

R (>= 3.4.0)

Imports

ggplot2 (>= 2.2.1), rjags (>= 4-6), R2jags (>= 0.5-7), MASS (>= 7.3), RColorBrewer (>= 1.1), reshape (>= 0.8.7), reshape2 (>= 1.4.3), lattice (>= 0.20-35), MCMCpack (>= 1.4-2), ggmcmc (>= 1.1), coda (>= 0.19-1), loo (>= 2.0.0), bayesplot (>= 1.4.0)

Suggests

gWidgets (>= 0.0-54), gWidgetsRGtk2 (>= 0.0-86), splancs (>= 2.01-40), knitr, rmarkdown, testthat

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