NAM

Nested Association Mapping

Designed for association studies in nested association mapping (NAM) panels, experimental and random panels. The method is described by Xavier et al. (2015) <doi:10.1093/bioinformatics/btv448>. It includes tools for genome-wide associations of multiple populations, marker quality control, population genetics analysis, genome-wide prediction, solving mixed models and finding variance components through likelihood and Bayesian methods.

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Description file content

Package
NAM
Type
Package
Title
Nested Association Mapping
Version
1.6.1
Date
2018-06-28
Author
Alencar Xavier, William Muir, Katy Rainey, Shizhong Xu.
Maintainer
Alencar Xavier
Description
Designed for association studies in nested association mapping (NAM) panels, experimental and random panels. The method is described by Xavier et al. (2015) . It includes tools for genome-wide associations of multiple populations, marker quality control, population genetics analysis, genome-wide prediction, solving mixed models and finding variance components through likelihood and Bayesian methods.
License
GPL-3
Imports
Rcpp,randomForest
LinkingTo
Rcpp
Depends
R (>= 3.2.0)
Packaged
2018-06-28 16:07:04 UTC; U787935
NeedsCompilation
yes
Repository
CRAN
Suggests
knitr,rmarkdown,lme4
VignetteBuilder
knitr
Date/Publication
2018-06-28 19:48:14 UTC

install.packages('NAM')

1.6.1

a month ago

Alencar Xavier

GPL-3

Depends on

R (>= 3.2.0)

Imports

Rcpp,randomForest

Suggests

knitr,rmarkdown,lme4

Discussions