NetworkToolbox

Methods and Measures for Brain, Cognitive, and Psychometric Network Analysis

Implements network analysis and graph theory measures used in neuroscience, cognitive science, and psychology. Methods include various filtering methods and approaches such as threshold, dependency (Kenett, Tumminello, Madi, Gur-Gershogoren, Mantegna, & Ben-Jacob, 2010 <doi:10.1371/journal.pone.0015032>), Information Filtering Networks (Barfuss, Massara, Di Matteo, & Aste, 2016 <doi:10.1103/PhysRevE.94.062306>), and Efficiency-Cost Optimization (Fallani, Latora, & Chavez, 2017 <doi:10.1371/journal.pcbi.1005305>). Brain methods include the recently developed Connectome Predictive Modeling (see references in package). Also implements several network measures including local network characteristics (e.g., centrality), community-level network characteristics (e.g., community centrality), global network characteristics (e.g., clustering coefficient), and various other measures associated with the reliability and reproducibility of network analysis.

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Description file content

Package
NetworkToolbox
Title
Methods and Measures for Brain, Cognitive, and Psychometric Network Analysis
Version
1.2.0
Date
2018-07-22
Author
Alexander Christensen
Maintainer
Alexander Christensen
Description
Implements network analysis and graph theory measures used in neuroscience, cognitive science, and psychology. Methods include various filtering methods and approaches such as threshold, dependency (Kenett, Tumminello, Madi, Gur-Gershogoren, Mantegna, & Ben-Jacob, 2010 ), Information Filtering Networks (Barfuss, Massara, Di Matteo, & Aste, 2016 ), and Efficiency-Cost Optimization (Fallani, Latora, & Chavez, 2017 ). Brain methods include the recently developed Connectome Predictive Modeling (see references in package). Also implements several network measures including local network characteristics (e.g., centrality), community-level network characteristics (e.g., community centrality), global network characteristics (e.g., clustering coefficient), and various other measures associated with the reliability and reproducibility of network analysis.
Depends
R (>= 3.3.0)
License
GPL (>= 3.0)
Encoding
UTF-8
LazyData
true
Imports
Matrix, psych, corrplot, fdrtool, R.matlab, MASS, pwr, igraph, qgraph, ppcor, parallel, foreach, doParallel
RoxygenNote
6.0.1.9000
NeedsCompilation
no
Packaged
2018-07-23 18:07:14 UTC; APCHRIST
Repository
CRAN
Date/Publication
2018-07-25 15:50:02 UTC

install.packages('NetworkToolbox')

1.2.0

19 days ago

Alexander Christensen

GPL (>= 3.0)

Depends on

R (>= 3.3.0)

Imports

Matrix, psych, corrplot, fdrtool, R.matlab, MASS, pwr, igraph, qgraph, ppcor, parallel, foreach, doParallel

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