PAC

Partition-Assisted Clustering and Multiple Alignments of Networks

Implements partition-assisted clustering and multiple alignments of networks. It 1) utilizes partition-assisted clustering to find robust and accurate clusters and 2) discovers coherent relationships of clusters across multiple samples. It is particularly useful for analyzing single-cell data set. Please see Li et al. (2017) <doi:10.1371/journal.pcbi.1005875> for detail method description.

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Description file content

Package
PAC
Type
Package
Title
Partition-Assisted Clustering and Multiple Alignments of Networks
Version
1.1.0
Date
2018-10-08
Author
Ye Henry Li, Dangna Li
Maintainer
Ye Henry Li
Description
Implements partition-assisted clustering and multiple alignments of networks. It 1) utilizes partition-assisted clustering to find robust and accurate clusters and 2) discovers coherent relationships of clusters across multiple samples. It is particularly useful for analyzing single-cell data set. Please see Li et al. (2017) for detail method description.
URL
License
GPL-3
Imports
Rcpp (>= 0.12.2),igraph,parmigene,infotheo,dplyr, Rtsne, ggplot2, ggrepel
Suggests
knitr
VignetteBuilder
knitr
LinkingTo
Rcpp
RoxygenNote
5.0.1
NeedsCompilation
yes
SystemRequirements
C++11
Packaged
2018-10-09 02:47:38 UTC; henryli
Repository
CRAN
Date/Publication
2018-10-09 11:50:05 UTC

install.packages('PAC')

1.1.0

8 days ago

https://doi.org/10.1371/journal.pcbi.1005875

Ye Henry Li

GPL-3

Imports

Rcpp (>= 0.12.2),igraph,parmigene,infotheo,dplyr, Rtsne, ggplot2, ggrepel

Suggests

knitr

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