PLNmodels

Poisson Lognormal Models

The Poisson-lognormal model and variants can be used for a variety of multivariate problems when count data are at play, including principal component analysis for count data (Chiquet, Mariadassou and Robin, 2018 <doi:10.1214/18-AOAS1177>), discriminant analysis and network inference (Chiquet, Mariadassou and Robin, 2018 <http://proceedings.mlr.press/v97/chiquet19a.html>). Implements variational algorithms to fit such models accompanied with a set of functions for visualization and diagnostic.

Total

0

Last month

0

Last week

0

Average per day

0

Daily downloads

Total downloads

Description file content

Package
PLNmodels
Title
Poisson Lognormal Models
Version
0.9.4
Description
The Poisson-lognormal model and variants can be used for a variety of multivariate problems when count data are at play, including principal component analysis for count data (Chiquet, Mariadassou and Robin, 2018 ), discriminant analysis and network inference (Chiquet, Mariadassou and Robin, 2018 ). Implements variational algorithms to fit such models accompanied with a set of functions for visualization and diagnostic.
URL
BugReports
https://github.com/jchiquet/PLNmodels/issues
License
GPL (>= 3)
Encoding
UTF-8
RoxygenNote
7.0.2
Depends
R (>= 3.4)
LazyData
true
biocViews
Imports
methods, stats, MASS, parallel, R6, glassoFast, Matrix, Rcpp, nloptr (>= 1.2.0), igraph, grid, gridExtra, dplyr, tidyr, ggplot2, corrplot, magrittr
Suggests
knitr, rmarkdown, testthat, covr, pkgdown, biomformat, phyloseq
LinkingTo
Rcpp, RcppArmadillo, nloptr (>= 1.2.0)
VignetteBuilder
knitr
Collate
'PLNfit-class.R' 'PLN.R' 'PLNLDA.R' 'PLNLDAfit-S3methods.R' 'PLNLDAfit-class.R' 'PLNPCA.R' 'PLNPCAfamily-S3methods.R' 'PLNfamily-class.R' 'PLNPCAfamily-class.R' 'PLNPCAfit-S3methods.R' 'PLNPCAfit-class.R' 'PLNfamily-S3methods.R' 'PLNfit-S3methods.R' 'PLNmodels-package.R' 'PLNnetwork.R' 'PLNnetworkfamily-S3methods.R' 'PLNnetworkfamily-class.R' 'PLNnetworkfit-S3methods.R' 'PLNnetworkfit-class.R' 'RcppExports.R' 'deprecated.R' 'import_utils.R' 'mollusk.R' 'plot_utils.R' 'trichoptera.R' 'utils-pipe.R' 'utils.R'
NeedsCompilation
yes
Packaged
2020-01-14 09:00:34 UTC; jchiquet
Author
Julien Chiquet [aut, cre] (), Mahendra Mariadassou [aut] (), Stéphane Robin [ctb]
Maintainer
Julien Chiquet
Repository
CRAN
Date/Publication
2020-01-14 10:00:16 UTC

install.packages('PLNmodels')

0.9.4

10 days ago

https://jchiquet.github.io/PLNmodels/

Julien Chiquet

GPL (>= 3)

Depends on

R (>= 3.4)

Imports

methods, stats, MASS, parallel, R6, glassoFast, Matrix, Rcpp, nloptr (>= 1.2.0), igraph, grid, gridExtra, dplyr, tidyr, ggplot2, corrplot, magrittr

Suggests

knitr, rmarkdown, testthat, covr, pkgdown, biomformat, phyloseq

Discussions