PTXQC

Quality Report Generation for MaxQuant Results

Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the MaxQuant software suite. Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format. Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015) 'doi:10.1021/acs.jproteome.5b00780'.

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Description file content

Package
PTXQC
Type
Package
Title
Quality Report Generation for MaxQuant Results
Version
0.92.6
Date
2019-04-16
Author
Chris Bielow
Maintainer
Chris Bielow
Description
Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the MaxQuant software suite. Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format. Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015) 'doi:10.1021/acs.jproteome.5b00780'.
SystemRequirements
pandoc (http://pandoc.org) for building Vignettes and output reports as HTML
Depends
R (>= 3.0.0)
Imports
data.table, ggplot2 (>= 2.2), ggdendro, graphics, grid, gridExtra, grDevices, gtable, kableExtra, knitr (>= 1.10), methods, plyr, proto, RColorBrewer, reshape2, rmarkdown, seqinr, stats, utils, yaml
Suggests
testthat
VignetteBuilder
knitr
License
GPL-2
RoxygenNote
6.1.1
URL
BugReports
https://github.com/cbielow/PTXQC/issues
NeedsCompilation
no
Packaged
2019-04-16 13:18:27 UTC; bielow
Repository
CRAN
Date/Publication
2019-04-16 14:02:49 UTC

install.packages('PTXQC')

0.92.6

2 months ago

https://github.com/cbielow/PTXQC

Chris Bielow

GPL-2

Depends on

R (>= 3.0.0)

Imports

data.table, ggplot2 (>= 2.2), ggdendro, graphics, grid, gridExtra, grDevices, gtable, kableExtra, knitr (>= 1.10), methods, plyr, proto, RColorBrewer, reshape2, rmarkdown, seqinr, stats, utils, yaml

Suggests

testthat

Discussions