PeakSegDisk

Disk-Based Constrained Change-Point Detection

Disk-based implementation of Functional Pruning Optimal Partitioning with up-down constraints <arXiv:1810.00117> for single-sample peak calling (independently for each sample and genomic problem), can handle huge data sets (10^7 or more).

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Description file content

Package
PeakSegDisk
Type
Package
Title
Disk-Based Constrained Change-Point Detection
Version
2019.9.27
Author
Toby Dylan Hocking
Maintainer
Toby Dylan Hocking
Description
Disk-based implementation of Functional Pruning Optimal Partitioning with up-down constraints for single-sample peak calling (independently for each sample and genomic problem), can handle huge data sets (10^7 or more).
License
GPL-3
Depends
R (>= 2.10)
Imports
data.table (>= 1.9.8)
Suggests
testthat, ggplot2, future.apply, future, knitr
VignetteBuilder
knitr
URL
BugReports
http://github.com/tdhock/PeakSegDisk/issues
NeedsCompilation
yes
Packaged
2019-11-18 21:41:58 UTC; th798
Repository
CRAN
Date/Publication
2019-11-18 23:10:02 UTC

install.packages('PeakSegDisk')

2019.9.27

26 days ago

http://github.com/tdhock/PeakSegDisk

Toby Dylan Hocking

GPL-3

Depends on

R (>= 2.10)

Imports

data.table (>= 1.9.8)

Suggests

testthat, ggplot2, future.apply, future, knitr

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