QTLRel

Tools for Mapping of Quantitative Traits of Genetically Related Individuals and Calculating Identity Coefficients from Pedigrees

This software provides tools for quantitative trait mapping in populations such as advanced intercross lines where relatedness among individuals should not be ignored. It can estimate background genetic variance components, impute missing genotypes, simulate genotypes, perform a genome scan for putative quantitative trait loci (QTL), and plot mapping results. It also has functions to calculate identity coefficients from pedigrees, especially suitable for pedigrees that consist of a large number of generations, or estimate identity coefficients from genotypic data in certain circumstances.

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Description file content

Package
QTLRel
Version
1.0
Date
2017-12-10
Title
Tools for Mapping of Quantitative Traits of Genetically Related Individuals and Calculating Identity Coefficients from Pedigrees
Author
Riyan Cheng [aut, cre]
Maintainer
Riyan Cheng
Description
This software provides tools for quantitative trait mapping in populations such as advanced intercross lines where relatedness among individuals should not be ignored. It can estimate background genetic variance components, impute missing genotypes, simulate genotypes, perform a genome scan for putative quantitative trait loci (QTL), and plot mapping results. It also has functions to calculate identity coefficients from pedigrees, especially suitable for pedigrees that consist of a large number of generations, or estimate identity coefficients from genotypic data in certain circumstances.
Depends
R (>= 2.10)
Imports
gdata, graphics, grDevices, lattice, stats
Suggests
qtl
LazyLoad
yes
LazyData
no
License
GPL (>= 2)
NeedsCompilation
yes
Packaged
2018-01-10 00:20:16 UTC; rcheng
Repository
CRAN
Date/Publication
2018-01-10 19:15:45 UTC

install.packages('QTLRel')

1.0

5 months ago

Riyan Cheng

GPL (>= 2)

Depends on

R (>= 2.10)

Imports

gdata, graphics, grDevices, lattice, stats

Suggests

qtl

Discussions