RAM

R for Amplicon-Sequencing-Based Microbial-Ecology

Characterizing environmental microbiota diversity using amplicon-based next generation sequencing (NGS) data. Functions are developed to manipulate operational taxonomic unit (OTU) table, perform descriptive and inferential statistics, and generate publication-quality plots.

Total

11,614

Last month

367

Last week

119

Average per day

12

Daily downloads

Total downloads

Description file content

Package
RAM
Type
Package
Title
R for Amplicon-Sequencing-Based Microbial-Ecology
Version
1.2.1.7
Date
2018-05-13
Author
Wen Chen, Joshua Simpson, C. Andre Levesque
Maintainer
Wen Chen
Description
Characterizing environmental microbiota diversity using amplicon-based next generation sequencing (NGS) data. Functions are developed to manipulate operational taxonomic unit (OTU) table, perform descriptive and inferential statistics, and generate publication-quality plots.
License
MIT + file LICENSE
Copyright
Government of Canada
Depends
vegan, ggplot2, stats
Imports
RColorBrewer, gplots, plyr, reshape2, scales, labdsv, grid, gridExtra, ggmap, permute, VennDiagram, data.table, FD, MASS, RgoogleMaps, lattice, reshape, ade4, phangorn, phytools, utils, graphics, grDevices, ape
Suggests
testthat, mapproj, gtable, indicspecies, Heatplus
Repository
CRAN
URL
BugReports
https://bitbucket.org/Wen_Chen/ram_releases/issues/
NeedsCompilation
no
Packaged
2018-05-15 14:08:28 UTC; chenw
Date/Publication
2018-05-15 15:38:34 UTC

Discussions