REIDS

Random Effects for the Identification of Differential Splicing

Contains the REIDS model presented in Van Moerbeke et al (2017) <doi:10.1186/s12859-017-1687-8> for the detection of alternative splicing. The method is extended by incorporating junction information for the assessment of alternative splicing. The vignette introduces the model and shows an example work flow.

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Description file content

Package
REIDS
Type
Package
Title
Random Effects for the Identification of Differential Splicing
Version
0.0.2
Date
2018-04-12
Author
Marijke Van Moerbeke
Maintainer
Marijke Van Moerbeke
Description
Contains the REIDS model presented in Van Moerbeke et al (2017) for the detection of alternative splicing. The method is extended by incorporating junction information for the assessment of alternative splicing. The vignette introduces the model and shows an example work flow.
License
GPL-3
LazyData
true
Depends
R (>= 2.10), aroma.affymetrix, aroma.core, GenomeGraphs, biomaRt
Imports
data.table,RColorBrewer,MCMCpack,lmtest,methods
RoxygenNote
6.0.1
NeedsCompilation
no
Packaged
2018-04-13 13:11:09 UTC; lucp8409
Repository
CRAN
Date/Publication
2018-04-13 13:38:26 UTC

install.packages('REIDS')

0.0.2

3 months ago

Marijke Van Moerbeke

GPL-3

Depends on

R (>= 2.10), aroma.affymetrix, aroma.core, GenomeGraphs, biomaRt

Imports

data.table,RColorBrewer,MCMCpack,lmtest,methods

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