RNAsmc

RNA Secondary Structure Module Mining, Comparison and Plotting

Provides function for RNA secondary structure plotting, comparison and module mining. Given a RNA secondary structure, you can obtain stem regions, hairpin loops, internal loops, bulge loops and multibranch loops of this RNA structure using this program. They are the basic modules of RNA secondary structure. For each module you get, you can use this program to label the RNA structure with a specific color. You can also use this program to compare two RNA secondary structures to get a score that represents similarity. Reference: Reuter JS, Mathews DH (2010) <doi:10.1186/1471-2105-11-129>.

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Description file content

Package
RNAsmc
Type
Package
Title
RNA Secondary Structure Module Mining, Comparison and Plotting
Version
0.3.0
Author
Zheng HeWei
Depends
RRNA,stats,graphics
Maintainer
Zheng HeWei
Description
Provides function for RNA secondary structure plotting, comparison and module mining. Given a RNA secondary structure, you can obtain stem regions, hairpin loops, internal loops, bulge loops and multibranch loops of this RNA structure using this program. They are the basic modules of RNA secondary structure. For each module you get, you can use this program to label the RNA structure with a specific color. You can also use this program to compare two RNA secondary structures to get a score that represents similarity. Reference: Reuter JS, Mathews DH (2010) .
License
GPL-2
LazyData
TRUE
NeedsCompilation
no
Packaged
2018-03-19 00:51:38 UTC; Administrator
Repository
CRAN
Date/Publication
2018-03-19 04:07:42 UTC

install.packages('RNAsmc')

0.3.0

8 months ago

Zheng HeWei

GPL-2

Depends on

RRNA,stats,graphics

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