RNeXML

Semantically Rich I/O for the 'NeXML' Format

Provides access to phyloinformatic data in 'NeXML' format. The package should add new functionality to R such as the possibility to manipulate 'NeXML' objects in more various and refined way and compatibility with 'ape' objects.

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Description file content

Package
RNeXML
Type
Package
Title
Semantically Rich I/O for the 'NeXML' Format
Version
2.4.0
Description
Provides access to phyloinformatic data in 'NeXML' format. The package should add new functionality to R such as the possibility to manipulate 'NeXML' objects in more various and refined way and compatibility with 'ape' objects.
URL
BugReports
https://github.com/ropensci/RNeXML/issues
Additional_repositories
https://cboettig.github.io/drat/
License
BSD_3_clause + file LICENSE
VignetteBuilder
knitr
Suggests
spelling, rdflib, geiger (>= 2.0), phytools (>= 0.3.93), knitr (>= 1.5), rfigshare (>= 0.3.0), knitcitations (>= 1.0.1), testthat (>= 0.10.0), rmarkdown (>= 0.3.3), rlang, xslt, covr, taxadb
Depends
R (>= 3.0.0), ape (>= 3.1), methods (>= 3.0.0)
Imports
XML (>= 3.95), plyr (>= 1.8), reshape2 (>= 1.2.2), httr (>= 0.3), uuid (>= 0.1-1), dplyr (>= 0.5.0), lazyeval (>= 0.1.0), tidyr (>= 0.3.1), stringr (>= 1.0), stringi, xml2
Collate
'S4-utils.R' 'classes.R' 'add_basic_meta.R' 'add_characters.R' 'add_meta.R' 'add_namespaces.R' 'nexmlTree.R' 'add_trees.R' 'character_classes.R' 'concatenate_nexml.R' 'constructors.R' 'deprecated.R' 'get_basic_metadata.R' 'get_characters.R' 'get_level.R' 'get_metadata.R' 'get_namespaces.R' 'get_rdf.R' 'get_taxa.R' 'get_taxa_meta.R' 'get_trees.R' 'internal_get_node_maps.R' 'internal_isEmpty.R' 'internal_name_by_id.R' 'internal_nexml_id.R' 'meta.R' 'nexml_add.R' 'nexml_get.R' 'nexml_methods.R' 'nexml_publish.R' 'nexml_read.R' 'nexml_validate.R' 'nexml_write.R' 'prefixed-uris.R' 'simmap.R' 'taxize_nexml.R' 'tbl_df.R' 'utils.R'
RoxygenNote
6.1.1
X-schema.org-applicationCategory
Data Publication
X-schema.org-keywords
metadata, nexml, phylogenetics, linked-data
X-schema.org-isPartOf
https://ropensci.org
Language
en-US
Encoding
UTF-8
NeedsCompilation
no
Packaged
2019-11-08 16:16:27 UTC; cboettig
Author
Carl Boettiger [cre, aut] (), Scott Chamberlain [aut] (), Hilmar Lapp [aut] (), Kseniia Shumelchyk [aut], Rutger Vos [aut] ()
Maintainer
Carl Boettiger
Repository
CRAN
Date/Publication
2019-11-08 18:20:07 UTC

install.packages('RNeXML')

2.4.0

7 days ago

https://docs.ropensci.org/RNeXML

Carl Boettiger

BSD_3_clause + file LICENSE

Depends on

R (>= 3.0.0), ape (>= 3.1), methods (>= 3.0.0)

Imports

XML (>= 3.95), plyr (>= 1.8), reshape2 (>= 1.2.2), httr (>= 0.3), uuid (>= 0.1-1), dplyr (>= 0.5.0), lazyeval (>= 0.1.0), tidyr (>= 0.3.1), stringr (>= 1.0), stringi, xml2

Suggests

spelling, rdflib, geiger (>= 2.0), phytools (>= 0.3.93), knitr (>= 1.5), rfigshare (>= 0.3.0), knitcitations (>= 1.0.1), testthat (>= 0.10.0), rmarkdown (>= 0.3.3), rlang, xslt, covr, taxadb

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