RPANDA

Phylogenetic ANalyses of DiversificAtion

Implements macroevolutionary analyses on phylogenetic trees. See Morlon et al. (2010) <DOI:10.1371/journal.pbio.1000493>, Morlon et al. (2011) <DOI:10.1073/pnas.1102543108>, Condamine et al. (2013) <DOI:10.1111/ele.12062>, Morlon et al. (2014) <DOI:10.1111/ele.12251>, Manceau et al. (2015) <DOI:10.1111/ele.12415>, Lewitus & Morlon (2016) <DOI:10.1093/sysbio/syv116>, Drury et al. (2016) <DOI:10.1093/sysbio/syw020>, Manceau et al. (2016) <DOI:10.1093/sysbio/syw115>, Morlon et al. (2016) <DOI:10.1111/2041-210X.12526>, Clavel & Morlon (2017) <DOI:10.1073/pnas.1606868114>, Drury et al. (2017) <DOI:10.1093/sysbio/syx079>, Lewitus & Morlon (2017) <DOI:10.1093/sysbio/syx095>, Drury et al. (2018) <DOI:10.1371/journal.pbio.2003563>, Clavel et al. (2019) <DOI:10.1093/sysbio/syy045> and Maliet et al. (2019) <DOI:10.1038/s41559-019-0908-0>.

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Description file content

Package
RPANDA
Version
1.6
Date
2019-06-04
Type
Package
Title
Phylogenetic ANalyses of DiversificAtion
Depends
R (>= 2.14.2), picante, methods
Suggests
testthat
Imports
ape, pspline, deSolve, igraph, TESS, cluster, fpc, pvclust, corpcor, phytools, mvMORPH (>= 1.1.0), stats, graphics, grDevices, utils, geiger, mvtnorm, Matrix, pracma, glassoFast, Rmpfr, fields, coda, parallel
Encoding
UTF-8
Author
Hélène Morlon [aut, cre, cph], Eric Lewitus [aut, cph], Fabien Condamine [aut, cph], Marc Manceau [aut, cph], Julien Clavel [aut, cph], Jonathan Drury [aut, cph], Olivier Billaud [aut, cph], Odile Maliet [aut, cph]
Maintainer
Hélène Morlon
Description
Implements macroevolutionary analyses on phylogenetic trees. See Morlon et al. (2010) , Morlon et al. (2011) , Condamine et al. (2013) , Morlon et al. (2014) , Manceau et al. (2015) , Lewitus & Morlon (2016) , Drury et al. (2016) , Manceau et al. (2016) , Morlon et al. (2016) , Clavel & Morlon (2017) , Drury et al. (2017) , Lewitus & Morlon (2017) , Drury et al. (2018) , Clavel et al. (2019) and Maliet et al. (2019) .
License
GPL-2
URL
Repository
CRAN
RoxygenNote
6.1.1
NeedsCompilation
yes
Packaged
2019-06-11 08:36:52 UTC; morlon
Date/Publication
2019-06-11 11:00:04 UTC

install.packages('RPANDA')

1.6

2 months ago

https://github.com/hmorlon/PANDA

Hélène Morlon

GPL-2

Depends on

R (>= 2.14.2), picante, methods

Imports

ape, pspline, deSolve, igraph, TESS, cluster, fpc, pvclust, corpcor, phytools, mvMORPH (>= 1.1.0), stats, graphics, grDevices, utils, geiger, mvtnorm, Matrix, pracma, glassoFast, Rmpfr, fields, coda, parallel

Suggests

testthat

Discussions