RaceID

Identification of Cell Types and Inference of Lineage Trees from Single-Cell RNA-Seq Data

Application of 'RaceID' allows inference of cell types and prediction of lineage trees by he StemID2 algorithm. Herman, J.S., Sagar, Grün D. (2018) <DOI:10.1038/nmeth.4662>.

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Description file content

Package
RaceID
Title
Identification of Cell Types and Inference of Lineage Trees from Single-Cell RNA-Seq Data
Version
0.1.7
Date
2020-01-12
Author
Dominic Grün
Maintainer
Dominic Grün
Description
Application of 'RaceID' allows inference of cell types and prediction of lineage trees by he StemID2 algorithm. Herman, J.S., Sagar, Grün D. (2018) .
Depends
R (>= 3.3)
biocViews
Imports
coop, compiler, cluster, FateID, FNN, fpc, ggplot2, grDevices, ica, igraph, irlba, locfit, methods, MASS, Matrix, parallel, pheatmap, propr, quadprog, randomForest, Rcpp, RColorBrewer, Rtsne, umap, vegan
LinkingTo
Rcpp (>= 0.11.0)
Suggests
DESeq2, destiny, knitr, rmarkdown, scran
VignetteBuilder
knitr
License
GPL-3
Encoding
UTF-8
LazyData
true
RoxygenNote
6.0.1
NeedsCompilation
yes
Packaged
2020-01-12 19:17:54 UTC; d.grun
Repository
CRAN
Date/Publication
2020-01-13 19:40:05 UTC

install.packages('RaceID')

0.1.7

11 days ago

Dominic Grün

GPL-3

Depends on

R (>= 3.3)

Imports

coop, compiler, cluster, FateID, FNN, fpc, ggplot2, grDevices, ica, igraph, irlba, locfit, methods, MASS, Matrix, parallel, pheatmap, propr, quadprog, randomForest, Rcpp, RColorBrewer, Rtsne, umap, vegan

Suggests

DESeq2, destiny, knitr, rmarkdown, scran

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