RaceID

Identification of Cell Types and Inference of Lineage Trees from Single-Cell RNA-Seq Data

Application of 'RaceID' allows inference of cell types and prediction of lineage trees by he StemID2 algorithm. Herman, J.S., Sagar, Grün D. (2018) <DOI:10.1038/nmeth.4662>.

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Description file content

Package
RaceID
Title
Identification of Cell Types and Inference of Lineage Trees from Single-Cell RNA-Seq Data
Version
0.1.1
Date
2018-08-07
Author
Dominic Grün
Maintainer
Dominic Grün
Description
Application of 'RaceID' allows inference of cell types and prediction of lineage trees by he StemID2 algorithm. Herman, J.S., Sagar, Grün D. (2018) .
Depends
R (>= 3.3)
biocViews
Imports
coop, cluster, FateID, fpc, grDevices, ica, igraph, irlba, locfit, methods, MASS, Matrix, pheatmap, quadprog, randomForest, RColorBrewer, Rtsne, vegan
Suggests
DESeq2, destiny, knitr, rmarkdown, scran
VignetteBuilder
knitr
License
GPL-3
Encoding
UTF-8
LazyData
true
RoxygenNote
6.0.1
NeedsCompilation
no
Packaged
2018-08-07 11:27:22 UTC; d.grun
Repository
CRAN
Date/Publication
2018-08-07 13:40:03 UTC

install.packages('RaceID')

0.1.1

2 months ago

Dominic Grün

GPL-3

Depends on

R (>= 3.3)

Imports

coop, cluster, FateID, fpc, grDevices, ica, igraph, irlba, locfit, methods, MASS, Matrix, pheatmap, quadprog, randomForest, RColorBrewer, Rtsne, vegan

Suggests

DESeq2, destiny, knitr, rmarkdown, scran

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