RxODE

Facilities for Simulating from ODE-Based Models

Facilities for running simulations from ordinary differential equation (ODE) models, such as pharmacometrics and other compartmental models. A compilation manager translates the ODE model into C, compiles it, and dynamically loads the object code into R for improved computational efficiency. An event table object facilitates the specification of complex dosing regimens (optional) and sampling schedules. NB: The use of this package requires both C and Fortran compilers, for details on their use with R please see Section 6.3, Appendix A, and Appendix D in the "R Administration and Installation" manual. Also the code is mostly released under GPL. The VODE and LSODA are in the public domain. The information is available in the inst/COPYRIGHTS.

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Description file content

Package
RxODE
Version
0.9.1-8
Title
Facilities for Simulating from ODE-Based Models
Maintainer
Wenping Wang
Depends
R (>= 3.5.0)
Suggests
knitr, DT, data.table (>= 1.12.4), nlme, shiny, tcltk, testthat, usethis, devtools, covr, rmarkdown, SnakeCharmR, dplyr (>= 0.8.0), tidyr, tibble, curl, gridExtra, microbenchmark, scales, stringi, htmltools, reticulate, rlang, installr
Imports
Matrix, PreciseSums (>= 0.3), Rcpp (>= 0.12.3), brew, cli, crayon, digest, dparser (>= 0.1.8), ggforce, ggplot2, inline, magrittr, memoise, methods, mvnfast, pillar, rex, sys, units(>= 0.6-0), utils, assertthat, lotri, remotes
Description
Facilities for running simulations from ordinary differential equation (ODE) models, such as pharmacometrics and other compartmental models. A compilation manager translates the ODE model into C, compiles it, and dynamically loads the object code into R for improved computational efficiency. An event table object facilitates the specification of complex dosing regimens (optional) and sampling schedules. NB: The use of this package requires both C and Fortran compilers, for details on their use with R please see Section 6.3, Appendix A, and Appendix D in the "R Administration and Installation" manual. Also the code is mostly released under GPL. The VODE and LSODA are in the public domain. The information is available in the inst/COPYRIGHTS.
BugReports
https://github.com/nlmixrdevelopment/RxODE/issues
NeedsCompilation
yes
VignetteBuilder
knitr
License
GPL (>= 3)
URL
RoxygenNote
6.1.1
Biarch
true
LinkingTo
dparser(>= 0.1.8), Rcpp (>= 0.12.3), RcppArmadillo(>= 0.9.300.2.0), PreciseSums (>= 0.3)
Encoding
UTF-8
LazyData
true
Language
en-US
Packaged
2019-11-11 23:40:11 UTC; matt
Author
Matthew L. Fidler [aut] (), Melissa Hallow [aut], Wenping Wang [aut, cre], Zufar Mulyukov [ctb], Justin Wilkins [ctb] (), Simon Frost [ctb], Goro Fuji [ctb], Morwenn [ctb], Heng Li [ctb], Yu Feng [ctb], Alan Hindmarsh [ctb], Linda Petzold [ctb], Ernst Hairer [ctb], Gerhard Wanner [ctb], J Colinge [ctb], Hadley Wickham [ctb], G Grothendieck [ctb], Robert Gentleman [ctb], Daniel C. Dillon [ctb], Ross Ihaka [ctb], Cleve Moler [ctb], Jack Dongarra [ctb], R core team [cph]
Repository
CRAN
Date/Publication
2019-11-12 14:30:06 UTC

install.packages('RxODE')

0.9.1-8

a month ago

https://nlmixrdevelopment.github.io/RxODE/

Wenping Wang

GPL (>= 3)

Depends on

R (>= 3.5.0)

Imports

Matrix, PreciseSums (>= 0.3), Rcpp (>= 0.12.3), brew, cli, crayon, digest, dparser (>= 0.1.8), ggforce, ggplot2, inline, magrittr, memoise, methods, mvnfast, pillar, rex, sys, units(>= 0.6-0), utils, assertthat, lotri, remotes

Suggests

knitr, DT, data.table (>= 1.12.4), nlme, shiny, tcltk, testthat, usethis, devtools, covr, rmarkdown, SnakeCharmR, dplyr (>= 0.8.0), tidyr, tibble, curl, gridExtra, microbenchmark, scales, stringi, htmltools, reticulate, rlang, installr

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