SCORPIUS

Inferring Developmental Chronologies from Single-Cell RNA Sequencing Data

An accurate and easy tool for performing linear trajectory inference on single cells using single-cell RNA sequencing data. In addition, SCORPIUS provides functions for discovering the most important genes with respect to the reconstructed trajectory, as well as nice visualisation tools. Cannoodt et al. (2016) <doi:10.1101/079509>.

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Description file content

Package
SCORPIUS
Type
Package
Title
Inferring Developmental Chronologies from Single-Cell RNA Sequencing Data
Version
1.0.4.1
Description
An accurate and easy tool for performing linear trajectory inference on single cells using single-cell RNA sequencing data. In addition, SCORPIUS provides functions for discovering the most important genes with respect to the reconstructed trajectory, as well as nice visualisation tools. Cannoodt et al. (2016) .
License
GPL-3
Encoding
UTF-8
URL
BugReports
https://github.com/rcannood/SCORPIUS/issues
LazyData
true
RoxygenNote
6.1.1
VignetteBuilder
knitr
Depends
R (>= 3.0.0)
Imports
dplyr, dynutils (>= 1.0.3), dyndimred (>= 1.0.1), grDevices, ggplot2 (>= 2.0), MASS, Matrix, mclust, pbapply, pheatmap, princurve (>= 2.1.4), purrr, ranger, RColorBrewer, stats, tidyr, TSP, utils
Suggests
knitr, rmarkdown, testthat (>= 2.1.0)
NeedsCompilation
no
Packaged
2019-08-07 11:10:28 UTC; rcannood
Author
Robrecht Cannoodt [aut, cre] (, rcannood), Wouter Saelens [ctb] (, zouter)
Maintainer
Robrecht Cannoodt
Repository
CRAN
Date/Publication
2019-08-07 11:50:09 UTC

install.packages('SCORPIUS')

1.0.4.1

14 days ago

http://github.com/rcannood/SCORPIUS

Robrecht Cannoodt

GPL-3

Depends on

R (>= 3.0.0)

Imports

dplyr, dynutils (>= 1.0.3), dyndimred (>= 1.0.1), grDevices, ggplot2 (>= 2.0), MASS, Matrix, mclust, pbapply, pheatmap, princurve (>= 2.1.4), purrr, ranger, RColorBrewer, stats, tidyr, TSP, utils

Suggests

knitr, rmarkdown, testthat (>= 2.1.0)

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