SPUTNIK

SPatially aUTomatic deNoising for Ims toolKit

A set of tools for the peak filtering of mass spectrometry imaging data (MSI or IMS) based on spatial distribution of signal. Given a region-of-interest (ROI), representing the spatial region where the informative signal is expected to be localized, a series of filters determine which peak signals are characterized by an implausible spatial distribution. The filters reduce the dataset dimensionality and increase its information vs noise ratio, improving the quality of the unsupervised analysis results, reducing data dimensionality and simplifying the chemical interpretation.

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Description file content

Package
SPUTNIK
Type
Package
Title
SPatially aUTomatic deNoising for Ims toolKit
Version
1.1.1
Author
Paolo Inglese [aut, cre], Goncalo Correia [aut, ctb]
Maintainer
Paolo Inglese
Description
A set of tools for the peak filtering of mass spectrometry imaging data (MSI or IMS) based on spatial distribution of signal. Given a region-of-interest (ROI), representing the spatial region where the informative signal is expected to be localized, a series of filters determine which peak signals are characterized by an implausible spatial distribution. The filters reduce the dataset dimensionality and increase its information vs noise ratio, improving the quality of the unsupervised analysis results, reducing data dimensionality and simplifying the chemical interpretation.
Depends
R (>= 3.4.0)
License
GPL (>= 3)
Encoding
UTF-8
LazyData
no
Imports
e1071, spatstat, viridis, SDMTools, ggplot2, reshape, imager, methods, infotheo, parallel
RoxygenNote
6.1.0
URL
BugReports
https://github.com/paoloinglese/SPUTNIK/issues
NeedsCompilation
no
Packaged
2018-10-25 19:19:19 UTC; paoloinglese
Repository
CRAN
Date/Publication
2018-10-25 21:50:28 UTC

install.packages('SPUTNIK')

1.1.1

a month ago

https://github.com/paoloinglese/SPUTNIK

Paolo Inglese

GPL (>= 3)

Depends on

R (>= 3.4.0)

Imports

e1071, spatstat, viridis, SDMTools, ggplot2, reshape, imager, methods, infotheo, parallel

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