UCSCXenaTools

Download and Explore Datasets from UCSC Xena Data Hubs

Download and explore datasets from UCSC Xena data hubs, which are a collection of UCSC-hosted public databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others. Databases are normalized so they can be combined, linked, filtered, explored and downloaded. This package is based on 'XenaR' package.

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Description file content

Package
UCSCXenaTools
Title
Download and Explore Datasets from UCSC Xena Data Hubs
Version
0.2.4
Maintainer
Shixiang Wang
URL
BugReports
https://github.com/ShixiangWang/UCSCXenaTools/issues
Description
Download and explore datasets from UCSC Xena data hubs, which are a collection of UCSC-hosted public databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others. Databases are normalized so they can be combined, linked, filtered, explored and downloaded. This package is based on 'XenaR' package.
Depends
R (>= 2.10)
Imports
httr, readr, methods, utils, dplyr, shinydashboard, shiny, DT
License
GPL-3
Encoding
UTF-8
LazyData
true
Suggests
knitr, rmarkdown, prettydoc
VignetteBuilder
knitr
RoxygenNote
6.1.0
NeedsCompilation
no
Packaged
2018-09-12 06:08:06 UTC; wsx
Author
Shixiang Wang [aut, cre], Martin Morgan [aut]
Repository
CRAN
Date/Publication
2018-09-12 09:20:03 UTC

install.packages('UCSCXenaTools')

0.2.4

10 days ago

https://github.com/ShixiangWang/UCSCXenaTools

Shixiang Wang

GPL-3

Depends on

R (>= 2.10)

Imports

httr, readr, methods, utils, dplyr, shinydashboard, shiny, DT

Suggests

knitr, rmarkdown, prettydoc

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