apcluster

Affinity Propagation Clustering

Implements Affinity Propagation clustering introduced by Frey and Dueck (2007) <DOI:10.1126/science.1136800>. The algorithms are largely analogous to the 'Matlab' code published by Frey and Dueck. The package further provides leveraged affinity propagation and an algorithm for exemplar-based agglomerative clustering that can also be used to join clusters obtained from affinity propagation. Various plotting functions are available for analyzing clustering results.

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Description file content

Package
apcluster
Type
Package
Title
Affinity Propagation Clustering
Version
1.4.7
Date
2018-05-29
Depends
R (>= 3.0.0)
Imports
Rcpp (>= 0.11.1), methods, Matrix, stats, graphics, grDevices
Suggests
Biostrings, kebabs (>= 1.5.4), knitr
Author
Ulrich Bodenhofer, Johannes Palme, Chrats Melkonian, Andreas Kothmeier, Nikola Kostic
Maintainer
Ulrich Bodenhofer
Description
Implements Affinity Propagation clustering introduced by Frey and Dueck (2007) . The algorithms are largely analogous to the 'Matlab' code published by Frey and Dueck. The package further provides leveraged affinity propagation and an algorithm for exemplar-based agglomerative clustering that can also be used to join clusters obtained from affinity propagation. Various plotting functions are available for analyzing clustering results.
License
GPL (>= 2)
Collate
AllClasses.R AllGenerics.R access-methods.R coerce-methods.R show-methods.R labels-methods.R length-methods.R revDend.R heatmap-methods.R plot-methods.R cutree-methods.R sort-methods.R aggExCluster-methods.R apcluster-methods.R apclusterL-methods.R apclusterK-methods.R apclusterDemo.R preferenceRange-methods.R similarity.R simpleDist.R conversions.R
URL
VignetteBuilder
knitr
LinkingTo
Rcpp
LazyLoad
yes
Repository
CRAN
NeedsCompilation
yes
Packaged
2018-05-29 19:43:28 UTC; bodenhof
Date/Publication
2018-05-29 22:07:55 UTC

install.packages('apcluster')

1.4.7

5 months ago

http://www.bioinf.jku.at/software/apcluster/

Ulrich Bodenhofer

GPL (>= 2)

Depends on

R (>= 3.0.0)

Imports

Rcpp (>= 0.11.1), methods, Matrix, stats, graphics, grDevices

Suggests

Biostrings, kebabs (>= 1.5.4), knitr

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