breathtestcore

Core Functions to Read and Fit 13c Time Series from Breath Tests

Reads several formats of 13C data (IRIS/Wagner, BreathID) and CSV. Creates artificial sample data for testing. Fits Maes/Ghoos, Bluck-Coward self-correcting formula using 'nls', 'nlme'. Methods to fit breath test curves with Bayesian Stan methods are refactored to package 'breathteststan'. For a Shiny GUI, see package 'dmenne/breathtestshiny' on github.

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Description file content

Package
breathtestcore
Title
Core Functions to Read and Fit 13c Time Series from Breath Tests
Version
0.4.5
Description
Reads several formats of 13C data (IRIS/Wagner, BreathID) and CSV. Creates artificial sample data for testing. Fits Maes/Ghoos, Bluck-Coward self-correcting formula using 'nls', 'nlme'. Methods to fit breath test curves with Bayesian Stan methods are refactored to package 'breathteststan'. For a Shiny GUI, see package 'dmenne/breathtestshiny' on github.
Depends
R (>= 3.4.0)
Imports
nlme, MASS, stringr, dplyr, purrr, readr, tibble, methods, readxl, assertthat, broom, tidyr, ggplot2, ggfittext, signal, utils, multcomp, xml2
Suggests
testthat, covr, knitr, survival, gridExtra
URL
BugReports
https://github.com/dmenne/breathtestcore/issues
License
GPL-3
RoxygenNote
6.1.0
LazyData
true
VignetteBuilder
knitr
SystemRequirements
pandoc
Encoding
UTF-8
NeedsCompilation
no
Packaged
2018-10-17 12:46:08 UTC; Dieter
Author
Dieter Menne [aut, cre], Menne Biomed Consulting Tuebingen [cph], Benjamin Misselwitz [fnd], Mark Fox [fnd], Andreas Steingoetter [dtc], University Hospital of Zurich, Dep. Gastroenterology [fnd, dtc]
Maintainer
Dieter Menne
Repository
CRAN
Date/Publication
2018-10-17 13:10:03 UTC

install.packages('breathtestcore')

0.4.5

2 days ago

https://github.com/dmenne/breathtestcore

Dieter Menne

GPL-3

Depends on

R (>= 3.4.0)

Imports

nlme, MASS, stringr, dplyr, purrr, readr, tibble, methods, readxl, assertthat, broom, tidyr, ggplot2, ggfittext, signal, utils, multcomp, xml2

Suggests

testthat, covr, knitr, survival, gridExtra

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