cRegulome

Obtain and Visualize Regulome-Gene Expression Correlations in Cancer

Builds a 'SQLite' database file of pre-calculated transcription factor/microRNA-gene correlations (co-expression) in cancer from the Cistrome Cancer Liu et al. (2011) <doi:10.1186/gb-2011-12-8-r83> and 'miRCancerdb' databases (in press). Provides custom classes and functions to query, tidy and plot the correlation data.

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Description file content

Package
cRegulome
Type
Package
Version
0.3.1
Title
Obtain and Visualize Regulome-Gene Expression Correlations in Cancer
Description
Builds a 'SQLite' database file of pre-calculated transcription factor/microRNA-gene correlations (co-expression) in cancer from the Cistrome Cancer Liu et al. (2011) and 'miRCancerdb' databases (in press). Provides custom classes and functions to query, tidy and plot the correlation data.
License
GPL-3
URL
BugReports
https://github.com/ropensci/cRegulome/issues
Encoding
UTF-8
LazyData
true
RoxygenNote
6.1.1
Depends
R(>= 2.10.0)
Imports
DBI, graphics, httr, RSQLite, UpSetR, VennDiagram, ggplot2, ggridges, grid, R.utils, igraph
VignetteBuilder
knitr
Suggests
knitr, rmarkdown, testthat, covr, readxl, AnnotationDbi, org.Hs.eg.db, clusterProfiler
NeedsCompilation
no
Packaged
2019-05-25 02:44:57 UTC; rstudio
Author
Mahmoud Ahmed [aut, cre] ()
Maintainer
Mahmoud Ahmed
Repository
CRAN
Date/Publication
2019-05-25 04:20:02 UTC

install.packages('cRegulome')

0.3.1

a month ago

https://github.com/ropensci/cRegulome

Mahmoud Ahmed

GPL-3

Depends on

R(>= 2.10.0)

Imports

DBI, graphics, httr, RSQLite, UpSetR, VennDiagram, ggplot2, ggridges, grid, R.utils, igraph

Suggests

knitr, rmarkdown, testthat, covr, readxl, AnnotationDbi, org.Hs.eg.db, clusterProfiler

Discussions