cRegulome

Obtain and Visualize Regulome-Gene Expression Correlations in Cancer

Builds a 'SQLite' database file of pre-calculated transcription factor/microRNA-gene correlations (co-expression) in cancer from the Cistrome Cancer Liu et al. (2011) <doi:10.1186/gb-2011-12-8-r83> and 'miRCancerdb' databases (in press). Provides custom classes and functions to query, tidy and plot the correlation data.

Total

2,808

Last month

827

Last week

357

Average per day

28

Daily downloads

Total downloads

Description file content

Package
cRegulome
Type
Package
Version
0.2.0
Title
Obtain and Visualize Regulome-Gene Expression Correlations in Cancer
Description
Builds a 'SQLite' database file of pre-calculated transcription factor/microRNA-gene correlations (co-expression) in cancer from the Cistrome Cancer Liu et al. (2011) and 'miRCancerdb' databases (in press). Provides custom classes and functions to query, tidy and plot the correlation data.
License
GPL-3
URL
BugReports
https://github.com/ropensci/cRegulome/issues
Encoding
UTF-8
LazyData
true
RoxygenNote
6.0.1
Depends
R(>= 2.10.0)
Imports
DBI, graphics, httr, RSQLite, UpSetR, VennDiagram, ggplot2, ggridges, grid, R.utils, igraph
VignetteBuilder
knitr
Suggests
knitr, rmarkdown, testthat, covr, readxl, AnnotationDbi, org.Hs.eg.db, clusterProfiler
NeedsCompilation
no
Packaged
2018-09-13 05:29:19 UTC; rstudio
Author
Mahmoud Ahmed [aut, cre]
Maintainer
Mahmoud Ahmed
Repository
CRAN
Date/Publication
2018-09-13 11:50:03 UTC

install.packages('cRegulome')

0.2.0

9 days ago

https://github.com/ropensci/cRegulome

Mahmoud Ahmed

GPL-3

Depends on

R(>= 2.10.0)

Imports

DBI, graphics, httr, RSQLite, UpSetR, VennDiagram, ggplot2, ggridges, grid, R.utils, igraph

Suggests

knitr, rmarkdown, testthat, covr, readxl, AnnotationDbi, org.Hs.eg.db, clusterProfiler

Discussions