clustree

Visualise Clusterings at Different Resolutions

Deciding what resolution to use can be a difficult question when approaching a clustering analysis. One way to approach this problem is to look at how samples move as the number of clusters increases. This package allows you to produce clustering trees, a visualisation for interrogating clusterings as resolution increases.

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Description file content

Package
clustree
Type
Package
Title
Visualise Clusterings at Different Resolutions
Version
0.2.2
Date
2018-07-10
Maintainer
Luke Zappia
Description
Deciding what resolution to use can be a difficult question when approaching a clustering analysis. One way to approach this problem is to look at how samples move as the number of clusters increases. This package allows you to produce clustering trees, a visualisation for interrogating clusterings as resolution increases.
License
GPL-3
Encoding
UTF-8
LazyData
true
URL
BugReports
https://github.com/lazappi/clustree/issues
VignetteBuilder
knitr
Depends
R (>= 3.4), ggraph
Imports
checkmate, igraph, dplyr, grid, ggplot2, viridis, methods, rlang, tidygraph, ggrepel
Suggests
testthat, knitr, rmarkdown, SingleCellExperiment, Seurat, covr, SummarizedExperiment
RoxygenNote
6.0.1
NeedsCompilation
no
Packaged
2018-07-10 05:06:05 UTC; luke.zappia
Author
Luke Zappia [aut, cre] (), Alicia Oshlack [aut] (), Andrea Rau [ctb]
Repository
CRAN
Date/Publication
2018-07-10 09:00:03 UTC

install.packages('clustree')

0.2.2

2 months ago

https://github.com/lazappi/clustree

Luke Zappia

GPL-3

Depends on

R (>= 3.4), ggraph

Imports

checkmate, igraph, dplyr, grid, ggplot2, viridis, methods, rlang, tidygraph, ggrepel

Suggests

testthat, knitr, rmarkdown, SingleCellExperiment, Seurat, covr, SummarizedExperiment

Discussions