coarseDataTools

Analysis of Coarsely Observed Data

Functions to analyze coarse data. Specifically, it contains functions to (1) fit parametric accelerated failure time models to interval-censored survival time data, and (2) estimate the case-fatality ratio in scenarios with under-reporting. This package's development was motivated by applications to infectious disease: in particular, problems with estimating the incubation period and the case fatality ratio of a given disease. Sample data files are included in the package. See Reich et al. (2009) <doi:10.1002/sim.3659>, Reich et al. (2012) <doi:10.1111/j.1541-0420.2011.01709.x>, and Lessler et al. (2009) <doi:10.1016/S1473-3099(09)70069-6>.

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Description file content

Package
coarseDataTools
Version
0.6-4
Date
2019-06-04
Title
Analysis of Coarsely Observed Data
Maintainer
Nicholas G. Reich
License
GPL (>= 2)
URL
Imports
MCMCpack, graphics, stats, methods
Description
Functions to analyze coarse data. Specifically, it contains functions to (1) fit parametric accelerated failure time models to interval-censored survival time data, and (2) estimate the case-fatality ratio in scenarios with under-reporting. This package's development was motivated by applications to infectious disease: in particular, problems with estimating the incubation period and the case fatality ratio of a given disease. Sample data files are included in the package. See Reich et al. (2009) , Reich et al. (2012) , and Lessler et al. (2009) .
Collate
'CFR_estimation.R' 'dic.fit.mcmc.R' 'dic.fit.R' 'get.obs.type.R' 'S4stuff.R' 'sampleSizeSimulation.R' 'coarseDataTools-package.R'
RoxygenNote
6.1.1
NeedsCompilation
no
Packaged
2019-06-05 13:49:00 UTC; ngr
Author
Nicholas G. Reich [aut, cre], Justin Lessler [aut], Andrew Azman [aut], Zhian N. Kamvar [ctb]
Repository
CRAN
Date/Publication
2019-06-05 14:30:06 UTC

install.packages('coarseDataTools')

0.6-4

2 months ago

https://cran.r-project.org/package=coarseDataTools

Nicholas G. Reich

GPL (>= 2)

Imports

MCMCpack, graphics, stats, methods

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