conStruct

Models Spatially Continuous and Discrete Population Genetic Structure

A method for modeling genetic data as a combination of discrete layers, within each of which relatedness may decay continuously with geographic distance. This package contains code for running analyses (which are implemented in the modeling language 'rstan') and visualizing and interpreting output. See the paper for more details on the model and its utility.

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Description file content

Package
conStruct
Version
1.0.3
Date
2019-01-02
Title
Models Spatially Continuous and Discrete Population Genetic Structure
Description
A method for modeling genetic data as a combination of discrete layers, within each of which relatedness may decay continuously with geographic distance. This package contains code for running analyses (which are implemented in the modeling language 'rstan') and visualizing and interpreting output. See the paper for more details on the model and its utility.
License
GPL-3
Encoding
UTF-8
LazyData
true
ByteCompile
true
Depends
R (>= 3.4.0), Rcpp (>= 0.12.0), methods
Imports
rstan (>= 2.18.1), rstantools (>= 1.5.0), caroline, gtools, foreach, parallel, doParallel
LinkingTo
StanHeaders (>= 2.18.0), rstan (>= 2.18.1), BH (>= 1.66.0), Rcpp (>= 0.12.0), RcppEigen (>= 0.3.3.3.0)
SystemRequirements
GNU make
NeedsCompilation
yes
RoxygenNote
6.1.1
Suggests
knitr, rmarkdown, maps
VignetteBuilder
knitr
Packaged
2019-01-03 15:36:22 UTC; bradburd
Author
Gideon Bradburd [aut, cre]
Maintainer
Gideon Bradburd
Repository
CRAN
Date/Publication
2019-01-03 17:00:06 UTC

install.packages('conStruct')

1.0.3

2 months ago

Gideon Bradburd

GPL-3

Depends on

R (>= 3.4.0), Rcpp (>= 0.12.0), methods

Imports

rstan (>= 2.18.1), rstantools (>= 1.5.0), caroline, gtools, foreach, parallel, doParallel

Suggests

knitr, rmarkdown, maps

Discussions