dMod

Dynamic Modeling and Parameter Estimation in ODE Models

The framework provides functions to generate ODEs of reaction networks, parameter transformations, observation functions, residual functions, etc. The framework follows the paradigm that derivative information should be used for optimization whenever possible. Therefore, all major functions produce and can handle expressions for symbolic derivatives.

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Description file content

Package
dMod
Type
Package
Title
Dynamic Modeling and Parameter Estimation in ODE Models
Version
1.0.0
Date
2019-04-13
Author
Daniel Kaschek
Maintainer
Daniel Kaschek
Description
The framework provides functions to generate ODEs of reaction networks, parameter transformations, observation functions, residual functions, etc. The framework follows the paradigm that derivative information should be used for optimization whenever possible. Therefore, all major functions produce and can handle expressions for symbolic derivatives.
License
GPL (>= 2)
Depends
cOde (>= 1.0),
Imports
deSolve, rootSolve, ggplot2, parallel, stringr, plyr, dplyr, foreach, doParallel
Suggests
MASS, rPython, pander, knitr, rmarkdown
RoxygenNote
6.1.0
VignetteBuilder
knitr
NeedsCompilation
no
Packaged
2019-04-17 06:22:49 UTC; kaschek
Repository
CRAN
Date/Publication
2019-04-23 22:10:56 UTC

install.packages('dMod')

1.0.0

2 months ago

Daniel Kaschek

GPL (>= 2)

Depends on

cOde (>= 1.0),

Imports

deSolve, rootSolve, ggplot2, parallel, stringr, plyr, dplyr, foreach, doParallel

Suggests

MASS, rPython, pander, knitr, rmarkdown

Discussions