dendextend

Extending 'dendrogram' Functionality in R

Offers a set of functions for extending 'dendrogram' objects in R, letting you visualize and compare trees of 'hierarchical clusterings'. You can (1) Adjust a tree's graphical parameters - the color, size, type, etc of its branches, nodes and labels. (2) Visually and statistically compare different 'dendrograms' to one another.

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Description file content

Package
dendextend
Type
Package
Title
Extending 'dendrogram' Functionality in R
Version
1.8.0
Date
2018-04-28
Description
Offers a set of functions for extending 'dendrogram' objects in R, letting you visualize and compare trees of 'hierarchical clusterings'. You can (1) Adjust a tree's graphical parameters - the color, size, type, etc of its branches, nodes and labels. (2) Visually and statistically compare different 'dendrograms' to one another.
Depends
R (>= 3.0.0)
Imports
utils, stats, datasets, magrittr (>= 1.0.1), ggplot2, fpc, whisker, viridis
Suggests
knitr, rmarkdown, testthat, seriation, colorspace, plyr, ape, profdpm, microbenchmark, gplots, heatmaply, d3heatmap, dynamicTreeCut, pvclust, corrplot, DendSer, MASS, cluster, circlize (>= 0.2.5), covr
Enhances
ggdendro, dendroextras, Hmisc, data.table, rpart
VignetteBuilder
knitr
LazyData
true
License
GPL-2 | GPL-3
URL
BugReports
https://github.com/talgalili/dendextend/issues
RoxygenNote
6.0.1
NeedsCompilation
no
Packaged
2018-05-02 06:23:53 UTC; junior
Author
Tal Galili [aut, cre, cph] (https://www.r-statistics.com), Gavin Simpson [ctb], Gregory Jefferis [aut, ctb] (imported code from his dendroextras package), Marco Gallotta [ctb] (a.k.a: marcog), Johan Renaudie [ctb] (https://github.com/plannapus), The R Core Team [ctb] (Thanks for the Infastructure, and code in the examples), Kurt Hornik [ctb], Uwe Ligges [ctb], Andrej-Nikolai Spiess [ctb], Steve Horvath [ctb], Peter Langfelder [ctb], skullkey [ctb], Mark Van Der Loo [ctb] (https://github.com/markvanderloo d3dendrogram), Andrie de Vries [ctb] (ggdendro author), Zuguang Gu [ctb] (circlize author), Cath [ctb] (https://github.com/CathG), John Ma [ctb] (https://github.com/JohnMCMa), Krzysiek G [ctb] (https://github.com/storaged), Manuela Hummel [ctb] (https://github.com/hummelma), Chase Clark [ctb] (https://github.com/chasemc), Yoav Benjamini [ths]
Maintainer
Tal Galili
Repository
CRAN
Date/Publication
2018-05-03 11:02:48 UTC

install.packages('dendextend')

1.8.0

3 months ago

https://github.com/talgalili/dendextend/

Tal Galili

GPL-2 | GPL-3

Depends on

R (>= 3.0.0)

Imports

utils, stats, datasets, magrittr (>= 1.0.1), ggplot2, fpc, whisker, viridis

Suggests

knitr, rmarkdown, testthat, seriation, colorspace, plyr, ape, profdpm, microbenchmark, gplots, heatmaply, d3heatmap, dynamicTreeCut, pvclust, corrplot, DendSer, MASS, cluster, circlize (>= 0.2.5), covr

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