detrendr

Detrend Images

Detrend fluorescence microscopy image series for fluorescence fluctuation and correlation spectroscopy ('FCS' and 'FFS') analysis. This package contains functionality published in a 2016 paper <doi:10.1093/bioinformatics/btx434> but it has been extended since then with the Robin Hood algorithm and thus contains unpublished work.

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Description file content

Package
detrendr
Type
Package
Title
Detrend Images
Version
0.6.1
Maintainer
Rory Nolan
Description
Detrend fluorescence microscopy image series for fluorescence fluctuation and correlation spectroscopy ('FCS' and 'FFS') analysis. This package contains functionality published in a 2016 paper but it has been extended since then with the Robin Hood algorithm and thus contains unpublished work.
License
BSD_3_clause + file LICENSE
Encoding
UTF-8
LazyData
true
LinkingTo
Rcpp, RcppParallel
SystemRequirements
GNU make
Imports
Rcpp, RcppParallel, parallel, checkmate, magrittr, dplyr, foreach, doParallel, iterators, purrr, ijtiff (>= 1.5.0), autothresholdr (>= 1.3.0), rlang, stringr, filesstrings (>= 3.0.0), plyr, glue (>= 1.3.0), sigmoid, matrixStats, stringi, assertthat
URL
BugReports
https://www.github.com/rorynolan/detrendr/issues
RoxygenNote
6.1.1
Suggests
testthat, knitr, rmarkdown, covr, abind, lattice, pacman, tidyr, graphics, gridExtra, arrayhelpers, ore (>= 1.4.0), clipr, styler, MASS, mgcv, spelling
VignetteBuilder
knitr
Language
en-US
NeedsCompilation
yes
Packaged
2019-04-13 14:19:48 UTC; rnolan
Author
Rory Nolan [aut, cre] (), Luis Alvarez [ctb, cph] (), Sergi Padilla-Parra [ctb, ths, cph] ()
Repository
CRAN
Date/Publication
2019-04-13 15:02:39 UTC

install.packages('detrendr')

0.6.1

10 days ago

https://rorynolan.github.io/detrendr

Rory Nolan

BSD_3_clause + file LICENSE

Imports

Rcpp, RcppParallel, parallel, checkmate, magrittr, dplyr, foreach, doParallel, iterators, purrr, ijtiff (>= 1.5.0), autothresholdr (>= 1.3.0), rlang, stringr, filesstrings (>= 3.0.0), plyr, glue (>= 1.3.0), sigmoid, matrixStats, stringi, assertthat

Suggests

testthat, knitr, rmarkdown, covr, abind, lattice, pacman, tidyr, graphics, gridExtra, arrayhelpers, ore (>= 1.4.0), clipr, styler, MASS, mgcv, spelling

Discussions