diceR

Diverse Cluster Ensemble in R

Performs cluster analysis using an ensemble clustering framework, Chiu & Talhouk (2018) <doi:10.1186/s12859-017-1996-y>. Results from a diverse set of algorithms are pooled together using methods such as majority voting, K-Modes, LinkCluE, and CSPA. There are options to compare cluster assignments across algorithms using internal and external indices, visualizations such as heatmaps, and significance testing for the existence of clusters.

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Description file content

Type
Package
Package
diceR
Title
Diverse Cluster Ensemble in R
Version
0.5.2
Date
2019-03-06
Description
Performs cluster analysis using an ensemble clustering framework, Chiu & Talhouk (2018) . Results from a diverse set of algorithms are pooled together using methods such as majority voting, K-Modes, LinkCluE, and CSPA. There are options to compare cluster assignments across algorithms using internal and external indices, visualizations such as heatmaps, and significance testing for the existence of clusters.
License
MIT + file LICENSE
URL
BugReports
https://github.com/AlineTalhouk/diceR/issues
Depends
R (>= 3.3)
Imports
abind, apcluster, assertthat, blockcluster, caret, class, cli, clue, cluster, clusterCrit, clValid, dbscan, dplyr (>= 0.7.5), e1071, flux, ggplot2, gplots, grDevices, Hmisc, infotheo, kernlab, klaR, kohonen, magrittr, mclust, methods, NMF, progress, purrr (>= 0.2.3), quantable, RankAggreg, RColorBrewer, Rcpp, Rtsne, sigclust, stringr, tibble, tidyr
Suggests
covr, knitr, pander, rmarkdown, testthat
LinkingTo
Rcpp
VignetteBuilder
knitr
Encoding
UTF-8
LazyData
true
RoxygenNote
6.1.1
NeedsCompilation
yes
Packaged
2019-03-08 01:19:31 UTC; dchiu
Author
Derek Chiu [aut, cre], Aline Talhouk [aut], Johnson Liu [ctb, com]
Maintainer
Derek Chiu
Repository
CRAN
Date/Publication
2019-03-08 13:42:55 UTC

install.packages('diceR')

0.5.2

2 months ago

https://github.com/AlineTalhouk/diceR

Derek Chiu

MIT + file LICENSE

Depends on

R (>= 3.3)

Imports

abind, apcluster, assertthat, blockcluster, caret, class, cli, clue, cluster, clusterCrit, clValid, dbscan, dplyr (>= 0.7.5), e1071, flux, ggplot2, gplots, grDevices, Hmisc, infotheo, kernlab, klaR, kohonen, magrittr, mclust, methods, NMF, progress, purrr (>= 0.2.3), quantable, RankAggreg, RColorBrewer, Rcpp, Rtsne, sigclust, stringr, tibble, tidyr

Suggests

covr, knitr, pander, rmarkdown, testthat

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