divDyn

Diversity Dynamics using Fossil Sampling Data

Functions to describe sampling and diversity dynamics of fossil occurrence datasets (e.g. from the Paleobiology Database). The package includes methods to calculate range- and occurrence-based metrics of taxonomic richness, extinction and origination rates, along with traditional sampling measures. A powerful subsampling tool is also included that implements frequently used sampling standardization methods in a multiple bin-framework. The plotting of time series and the occurrence data can be simplified by the functions incorporated in the package, as well other calculations, such as environmental affinities and extinction selectivity testing. Details can be found in: Kocsis, A.T.; Reddin, C.J.; Alroy, J. and Kiessling, W. (2019) <doi:10.1101/423780>.

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Description file content

Package
divDyn
Type
Package
Title
Diversity Dynamics using Fossil Sampling Data
Version
0.7.1
Author
Adam T. Kocsis, John Alroy, Carl J. Reddin, Wolfgang Kiessling
Maintainer
Adam T. Kocsis
Description
Functions to describe sampling and diversity dynamics of fossil occurrence datasets (e.g. from the Paleobiology Database). The package includes methods to calculate range- and occurrence-based metrics of taxonomic richness, extinction and origination rates, along with traditional sampling measures. A powerful subsampling tool is also included that implements frequently used sampling standardization methods in a multiple bin-framework. The plotting of time series and the occurrence data can be simplified by the functions incorporated in the package, as well other calculations, such as environmental affinities and extinction selectivity testing. Details can be found in: Kocsis, A.T.; Reddin, C.J.; Alroy, J. and Kiessling, W. (2019) .
License
CC BY 4.0
Date
2019-02-18
BugReports
https://github.com/divDyn/r_package/issues
Encoding
UTF-8
LazyData
false
Depends
R (>= 3.3.0)
Imports
Rcpp, stats, graphics, grDevices
NeedsCompilation
yes
RoxygenNote
6.1.1
LinkingTo
Rcpp
VignetteBuilder
knitr
Suggests
knitr, rmarkdown, vegan, icosa
Packaged
2019-02-18 21:23:21 UTC; Adam
Repository
CRAN
Date/Publication
2019-02-19 08:20:03 UTC

install.packages('divDyn')

0.7.1

2 days ago

Adam T. Kocsis

CC BY 4.0

Depends on

R (>= 3.3.0)

Imports

Rcpp, stats, graphics, grDevices

Suggests

knitr, rmarkdown, vegan, icosa

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