fastqcr

Quality Control of Sequencing Data

'FASTQC' is the most widely used tool for evaluating the quality of high throughput sequencing data. It produces, for each sample, an html report and a compressed file containing the raw data. If you have hundreds of samples, you are not going to open up each 'HTML' page. You need some way of looking at these data in aggregate. 'fastqcr' Provides helper functions to easily parse, aggregate and analyze 'FastQC' reports for large numbers of samples. It provides a convenient solution for building a 'Multi-QC' report, as well as, a 'one-sample' report with result interpretations.

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Description file content

Package
fastqcr
Type
Package
Title
Quality Control of Sequencing Data
Version
0.1.2
Date
2018-12-23
Description
'FASTQC' is the most widely used tool for evaluating the quality of high throughput sequencing data. It produces, for each sample, an html report and a compressed file containing the raw data. If you have hundreds of samples, you are not going to open up each 'HTML' page. You need some way of looking at these data in aggregate. 'fastqcr' Provides helper functions to easily parse, aggregate and analyze 'FastQC' reports for large numbers of samples. It provides a convenient solution for building a 'Multi-QC' report, as well as, a 'one-sample' report with result interpretations.
License
GPL-2
Encoding
UTF-8
LazyData
true
Depends
R (>= 3.1.2)
Imports
dplyr, grid, gridExtra, ggplot2, magrittr, readr (>= 1.3.0), rmarkdown(>= 1.4), rvest, tibble, tidyr, scales, stats, utils, xml2
Suggests
knitr
URL
BugReports
https://github.com/kassambara/fastqcr/issues
RoxygenNote
6.0.1
Collate
'utilities.R' 'fastqc.R' 'fastqc_install.R' 'qc_aggregate.R' 'qc_plot.R' 'qc_plot_collection.R' 'qc_problems.R' 'qc_read.R' 'qc_read_collection.R' 'qc_report.R' 'qc_unzip.R'
NeedsCompilation
no
Packaged
2019-01-02 20:28:16 UTC; kassambara
Author
Alboukadel Kassambara [aut, cre]
Maintainer
Alboukadel Kassambara
Repository
CRAN
Date/Publication
2019-01-03 00:20:16 UTC

install.packages('fastqcr')

0.1.2

a month ago

http://www.sthda.com/english/rpkgs/fastqcr/

Alboukadel Kassambara

GPL-2

Depends on

R (>= 3.1.2)

Imports

dplyr, grid, gridExtra, ggplot2, magrittr, readr (>= 1.3.0), rmarkdown(>= 1.4), rvest, tibble, tidyr, scales, stats, utils, xml2

Suggests

knitr

Discussions