genBaRcode

Analysis and Visualization Tools for Genetic Barcode Data

Provides the necessary functions to identify and extract a selection of already available barcode constructs (Cornils, K. et al. (2014) <doi:10.1093/nar/gku081>) and freely choosable barcode designs from next generation sequence (NGS) data. Furthermore, it offers the possibility to account for sequence errors, the calculation of barcode similarities and provides a variety of visualisation tools (Thielecke, L. et al. (2017) <doi:10.1038/srep43249>).

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Description file content

Package
genBaRcode
Title
Analysis and Visualization Tools for Genetic Barcode Data
Version
1.2.0
Author
Lars Thielecke
Maintainer
Lars Thielecke
Description
Provides the necessary functions to identify and extract a selection of already available barcode constructs (Cornils, K. et al. (2014) ) and freely choosable barcode designs from next generation sequence (NGS) data. Furthermore, it offers the possibility to account for sequence errors, the calculation of barcode similarities and provides a variety of visualisation tools (Thielecke, L. et al. (2017) ).
Depends
R (>= 3.4)
License
LGPL
Encoding
UTF-8
LazyData
true
Suggests
testthat
Imports
methods, Biostrings, RColorBrewer, ShortRead, ape, ggnetwork, ggplot2, ggraph, igraph, network, phangorn, stringdist, visNetwork, reshape2, S4Vectors, shiny, ggseqlogo, ggtree, dplyr, VennDiagram, futile.logger, future, future.apply, tools
RoxygenNote
6.1.1
NeedsCompilation
no
Packaged
2019-07-05 13:53:24 UTC; LT
Repository
CRAN
Date/Publication
2019-07-08 16:10:03 UTC

install.packages('genBaRcode')

1.2.0

9 days ago

Lars Thielecke

LGPL

Depends on

R (>= 3.4)

Imports

methods, Biostrings, RColorBrewer, ShortRead, ape, ggnetwork, ggplot2, ggraph, igraph, network, phangorn, stringdist, visNetwork, reshape2, S4Vectors, shiny, ggseqlogo, ggtree, dplyr, VennDiagram, futile.logger, future, future.apply, tools

Suggests

testthat

Discussions