genBart

Generate 'BART' File

A set of functions to generate and format results from statistical analyses of a wide range of high throughput experiments that can then be uploaded into the 'BART' (Bio-Statistical Analysis Reporting Tool) 'shiny' app <https://github.com/jcardenas14/BART>. The app provides users with tools to visualize and efficiently sift through large amounts of data and results.

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Description file content

Package
genBart
Type
Package
Title
Generate 'BART' File
Version
1.0.1
Description
A set of functions to generate and format results from statistical analyses of a wide range of high throughput experiments that can then be uploaded into the 'BART' (Bio-Statistical Analysis Reporting Tool) 'shiny' app . The app provides users with tools to visualize and efficiently sift through large amounts of data and results.
Depends
R (>= 3.4.0)
Imports
clValid (>= 0.6-6), data.table (>= 1.10.4), fastcluster (>= 1.1.22), ggplot2 (>= 2.2.1), grid (>= 3.3.3), gtools (>= 3.5.0), limma (>= 3.30.13), NMF (>= 0.20.6), pca3d (>= 0.10), psych (>= 1.7.3.21), qusage (>= 2.6.1), RColorBrewer (>= 1.1-2), reshape2 (>= 1.4.2), rmarkdown (>= 1.5), scales (>= 0.4.1), shiny (>= 1.0.3), shinydashboard (>= 0.5.3), shinyjs (>= 0.9), statmod (>= 1.2.2), stats (>= 3.3.3), stringr (>= 1.2.0), tools (>= 3.3.3), VennDiagram (>= 1.6.17)
Suggests
DESeq2 (>= 1.14.1), edgeR (>= 3.16.5), knitr (>= 1.15.1), SummarizedExperiment (>= 1.1.6), testthat
License
GPL-2 | GPL-3
Encoding
UTF-8
LazyData
true
LazyDataCompression
xz
VignetteBuilder
knitr
RoxygenNote
6.0.1
biocViews
Microarray, RNASeq, AnnotationData
NeedsCompilation
no
Packaged
2018-03-13 17:49:14 UTC; e89628
Author
Jacob Cardenas [aut, cre], Jacob Turner [aut], Derek Blankenship [aut]
Maintainer
Jacob Cardenas
Repository
CRAN
Date/Publication
2018-03-13 22:13:14 UTC

install.packages('genBart')

1.0.1

8 months ago

Jacob Cardenas

GPL-2 | GPL-3

Depends on

R (>= 3.4.0)

Imports

clValid (>= 0.6-6), data.table (>= 1.10.4), fastcluster (>= 1.1.22), ggplot2 (>= 2.2.1), grid (>= 3.3.3), gtools (>= 3.5.0), limma (>= 3.30.13), NMF (>= 0.20.6), pca3d (>= 0.10), psych (>= 1.7.3.21), qusage (>= 2.6.1), RColorBrewer (>= 1.1-2), reshape2 (>= 1.4.2), rmarkdown (>= 1.5), scales (>= 0.4.1), shiny (>= 1.0.3), shinydashboard (>= 0.5.3), shinyjs (>= 0.9), statmod (>= 1.2.2), stats (>= 3.3.3), stringr (>= 1.2.0), tools (>= 3.3.3), VennDiagram (>= 1.6.17)

Suggests

DESeq2 (>= 1.14.1), edgeR (>= 3.16.5), knitr (>= 1.15.1), SummarizedExperiment (>= 1.1.6), testthat

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