hoardeR

Collect and Retrieve Annotation Data for Various Genomic Data Using Different Webservices

Cross-species identification of novel gene candidates using the NCBI web service is provided. Further, sets of miRNA target genes can be identified by using the targetscan.org API.

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Description file content

Package
hoardeR
Type
Package
Title
Collect and Retrieve Annotation Data for Various Genomic Data Using Different Webservices
Version
0.9.4-2
Date
2019-02-12
Author
Daniel Fischer [aut, cre], Anu Sironen [aut]
Maintainer
Daniel Fischer
Depends
R (>= 3.2)
biocViews
Imports
bamsignals (>= 1.10.0), Biostrings (>= 2.46.0), data.table (>= 1.11.4), GenomicRanges (>= 1.30.3), GenomicTools.fileHandler (>= 0.1.4), httr (>= 1.3.1), IRanges (>= 2.12.0), KernSmooth (>= 2.23-15), knitr (>= 1.20), MASS (>= 7.3-31), R.utils (>= 2.6.0), RCurl (>= 1.95), rmarkdown (>= 1.10), Rsamtools (>= 1.30.0), S4Vectors (>= 0.16.0), seqinr (>= 1.0-2), stringr (>= 1.3.1), XML (>= 3.98-1.1)
Description
Cross-species identification of novel gene candidates using the NCBI web service is provided. Further, sets of miRNA target genes can be identified by using the targetscan.org API.
VignetteBuilder
knitr
License
GPL (>= 2)
NeedsCompilation
no
Packaged
2019-02-12 06:08:45 UTC; ejo138
Repository
CRAN
Date/Publication
2019-02-12 08:23:21 UTC

install.packages('hoardeR')

0.9.4-2

4 months ago

Daniel Fischer

GPL (>= 2)

Depends on

R (>= 3.2)

Imports

bamsignals (>= 1.10.0), Biostrings (>= 2.46.0), data.table (>= 1.11.4), GenomicRanges (>= 1.30.3), GenomicTools.fileHandler (>= 0.1.4), httr (>= 1.3.1), IRanges (>= 2.12.0), KernSmooth (>= 2.23-15), knitr (>= 1.20), MASS (>= 7.3-31), R.utils (>= 2.6.0), RCurl (>= 1.95), rmarkdown (>= 1.10), Rsamtools (>= 1.30.0), S4Vectors (>= 0.16.0), seqinr (>= 1.0-2), stringr (>= 1.3.1), XML (>= 3.98-1.1)

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