iC10

A Copy Number and Expression-Based Classifier for Breast Tumours

Implementation of the classifier described in the paper 'Genome-driven integrated classification of breast cancer validated in over 7,500 samples' (Ali HR et al., Genome Biology 2014). It uses copy number and/or expression form breast cancer data, trains a pamr classifier (Tibshirani et al.) with the features available and predicts the iC10 group.

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Description file content

Package
iC10
Type
Package
Title
A Copy Number and Expression-Based Classifier for Breast Tumours
Version
1.5
Date
2019-02-07l
Author
Oscar M Rueda
Maintainer
Oscar M. Rueda
Description
Implementation of the classifier described in the paper 'Genome-driven integrated classification of breast cancer validated in over 7,500 samples' (Ali HR et al., Genome Biology 2014). It uses copy number and/or expression form breast cancer data, trains a pamr classifier (Tibshirani et al.) with the features available and predicts the iC10 group.
License
GPL-3
Depends
pamr, impute, iC10TrainingData
Packaged
2019-02-08 09:15:31 UTC; rueda01
NeedsCompilation
no
Repository
CRAN
Date/Publication
2019-02-08 10:13:20 UTC

install.packages('iC10')

1.5

4 months ago

Oscar M. Rueda

GPL-3

Depends on

pamr, impute, iC10TrainingData

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