iC10TrainingData

Training Datasets for iC10 Package

Training datasets for iC10; which implements the classifier described in the paper 'Genome-driven integrated classification of breast cancer validated in over 7,500 samples' (Ali HR et al., Genome Biology 2014). It uses copy number and/or expression form breast cancer data, trains a pamr classifier (Tibshirani et al.) with the features available and predicts the iC10 group. Genomic annotation for the training dataset has been obtained from Mark Dunning's lluminaHumanv3.db package.

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Description file content

Package
iC10TrainingData
Type
Package
Title
Training Datasets for iC10 Package
Version
1.3.1
Date
2018-08-20
Author
Oscar M Rueda and Jose Antonio Seoane Fernandez
Maintainer
Oscar M. Rueda
Description
Training datasets for iC10; which implements the classifier described in the paper 'Genome-driven integrated classification of breast cancer validated in over 7,500 samples' (Ali HR et al., Genome Biology 2014). It uses copy number and/or expression form breast cancer data, trains a pamr classifier (Tibshirani et al.) with the features available and predicts the iC10 group. Genomic annotation for the training dataset has been obtained from Mark Dunning's lluminaHumanv3.db package.
License
GPL-3
Packaged
2018-08-20 15:18:40 UTC; rueda01
NeedsCompilation
no
Repository
CRAN
Date/Publication
2018-08-24 14:02:15 UTC

install.packages('iC10TrainingData')

1.3.1

a year ago

Oscar M. Rueda

GPL-3

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