idiogramFISH

Idiograms with Marks and Karyotype Indices

Plot idiograms of several karyotypes having a set of dataframes for chromosome data and optionally mark data. Includes also a function to plot holocentrics and its marks supporting micrometers and Mb. Marks can have square or dot form, its legend (label) can be drawn inline or to the right of karyotypes. It is possible to calculate chromosome indices by Levan et al. (1964) <doi:10.1111/j.1601-5223.1964.tb01953.x> , karyotype indices of Watanabe et al. (1999) <doi:10.1007/PL00013869> and Romero-Zarco (1986) <doi:10.2307/1221906> and classify chromosomes by morphology Guerra (1986) and Levan et al. (1964).

Total

0

Last month

0

Last week

0

Average per day

0

Daily downloads

Total downloads

Description file content

Package
idiogramFISH
Title
Idiograms with Marks and Karyotype Indices
Version
1.11.1
Date
2019-12-12
Description
Plot idiograms of several karyotypes having a set of dataframes for chromosome data and optionally mark data. Includes also a function to plot holocentrics and its marks supporting micrometers and Mb. Marks can have square or dot form, its legend (label) can be drawn inline or to the right of karyotypes. It is possible to calculate chromosome indices by Levan et al. (1964) , karyotype indices of Watanabe et al. (1999) and Romero-Zarco (1986) and classify chromosomes by morphology Guerra (1986) and Levan et al. (1964).
Depends
R (>= 3.0)
Imports
crayon, plyr, dplyr
License
GPL (>= 2)
Encoding
UTF-8
LazyData
true
Suggests
ggpubr, ggtree, phytools, ggplot2, treeio, knitr, kableExtra, prettydoc, rvcheck, rmarkdown, RCurl
VignetteBuilder
knitr, kableExtra, prettydoc, rmarkdown, RCurl, rvcheck
URL
BugReports
https://gitlab.com/ferroao/idiogramFISH/issues
RoxygenNote
6.1.1
NeedsCompilation
no
Packaged
2019-12-12 15:13:26 UTC; fernando
Author
Fernando Roa [aut, cre], Mariana PC Telles [ctb]
Maintainer
Fernando Roa
Repository
CRAN
Date/Publication
2019-12-12 16:30:05 UTC

install.packages('idiogramFISH')

1.11.1

3 days ago

https://ferroao.gitlab.io/manualidiogramfish/

Fernando Roa

GPL (>= 2)

Depends on

R (>= 3.0)

Imports

crayon, plyr, dplyr

Suggests

ggpubr, ggtree, phytools, ggplot2, treeio, knitr, kableExtra, prettydoc, rvcheck, rmarkdown, RCurl

Discussions